Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.9e-196 687.6 337 100.0
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.2e-96 357.5 311 64.0
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 6.8e-81 305.1 261 61.7
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.9e-78 297.0 310 52.9
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 2.3e-76 290.0 306 53.3
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 3.0e-76 289.7 306 52.3
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 3.6e-74 282.7 309 49.8
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 3.6e-74 282.7 313 49.8
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.2e-74 282.0 309 50.2
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.2e-74 282.0 309 50.2
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 6.2e-74 282.0 309 50.2
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 1.1e-73 281.2 311 49.8
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.4e-73 280.0 315 49.8
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 6.9e-73 278.5 310 49.7
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 1.5e-72 277.3 310 50.3
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.6e-72 276.6 314 49.0
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.6e-72 276.6 314 49.0
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 2.6e-72 276.6 310 49.4
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 3.4e-72 276.2 309 48.5
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 7.6e-72 275.0 309 49.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.6e-72 275.0 313 47.9
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.3e-71 274.2 309 49.5
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.7e-71 273.9 312 50.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.7e-71 273.9 309 48.9
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 4.9e-71 272.3 305 49.5
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 6.4e-71 271.9 308 49.7
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 6.4e-71 271.9 309 48.5
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 8.4e-71 271.6 294 49.3
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.1e-70 271.2 307 49.2
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.1e-70 271.2 227 60.8
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.4e-70 270.8 310 50.0
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.4e-70 270.8 315 47.9
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.4e-70 270.8 310 47.7
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 1.4e-70 270.8 227 60.8
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 1.9e-70 270.4 322 47.5
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.4e-70 270.0 310 48.4
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.2e-70 269.6 311 49.5
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 3.2e-70 269.6 312 49.4
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 3.2e-70 269.6 313 48.6
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 4.2e-70 269.2 307 47.9
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 4.2e-70 269.2 333 46.5
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.4e-70 268.9 315 48.9
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.2e-69 267.7 314 47.8
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.6e-69 267.3 309 48.5
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.1e-69 266.9 298 48.7
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.1e-69 266.9 313 47.6
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 2.1e-69 266.9 305 48.9
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 2.7e-69 266.5 309 49.5
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 4.6e-69 265.8 229 58.1
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 4.6e-69 265.8 310 49.7
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 6.0e-69 265.4 229 58.1
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 6.0e-69 265.4 313 46.6
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 6.0e-69 265.4 313 46.6
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 7.9e-69 265.0 298 49.0
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 1.0e-68 264.6 310 48.1
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.3e-68 264.2 228 59.2
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.3e-68 264.2 310 48.7
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.7e-68 263.8 310 48.1
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 3.9e-68 262.7 308 46.4
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 8.7e-68 261.5 312 46.5
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 8.7e-68 261.5 309 47.9
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 8.7e-68 261.5 309 48.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.5e-67 260.8 309 46.9
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.5e-67 260.8 312 49.4
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.5e-67 260.8 305 48.5
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.5e-67 260.0 309 47.6
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.3e-67 259.2 323 45.2
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 5.6e-67 258.8 310 47.1
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 7.4e-67 258.5 313 46.6
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.3e-66 257.7 229 58.1
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 1.3e-66 257.7 308 47.1
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.3e-66 257.7 312 46.8
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.6e-66 257.3 237 55.3
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.6e-66 257.3 227 57.7
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 8.1e-66 255.0 324 44.1
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.4e-65 254.2 303 46.5
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 3.1e-65 253.1 306 45.4
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.1e-65 253.1 321 45.8
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 3.1e-65 253.1 298 48.0
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 6.9e-65 251.9 315 45.7
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 9.0e-65 251.5 315 45.7
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.5e-64 250.8 303 46.2
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 3.4e-64 249.6 273 50.2
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 3.4e-64 249.6 302 45.7
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.8e-63 246.1 313 43.1
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 6.4e-63 245.4 314 43.6
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 8.4e-63 245.0 214 59.3
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.1e-62 244.6 253 51.4
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.9e-62 243.8 301 43.9
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 9.3e-62 241.5 229 54.1
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-61 240.4 310 44.8
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 2.7e-61 240.0 318 44.7
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 2.7e-61 240.0 236 51.7
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 3.5e-61 239.6 231 54.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.6e-61 239.2 316 44.6
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.6e-61 239.2 320 44.4
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 7.9e-61 238.4 315 44.4
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 7.9e-61 238.4 310 45.2
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.0e-60 238.0 231 54.5
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 2.3e-60 236.9 231 54.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-60 236.5 316 44.3
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 3.9e-60 236.1 231 53.7
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 3.9e-60 236.1 310 44.5
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 8.7e-60 235.0 277 48.7
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 8.7e-60 235.0 231 54.5
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.1e-59 234.6 151 71.5
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.1e-59 234.6 234 52.6
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.9e-59 233.8 314 43.3
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.9e-59 233.8 326 43.6
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-59 233.4 316 43.7
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 2.5e-59 233.4 313 44.4
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 5.6e-59 232.3 314 43.0
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 7.4e-59 231.9 231 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 2.1e-58 230.3 239 51.0
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.1e-58 230.3 231 52.4
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 8.1e-58 228.4 227 52.9
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.1e-57 228.0 274 47.1
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.4e-57 226.9 354 39.8
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.4e-57 226.9 224 53.6
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.0e-55 221.5 321 43.0
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.8e-55 219.5 145 71.0
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 3.8e-55 219.5 311 42.8
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 4.9e-55 219.2 200 57.0
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 2.5e-54 216.9 165 60.6
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.2e-54 216.1 227 49.8
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 7.1e-54 215.3 209 52.6
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 2.1e-53 213.8 217 51.2
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 6.7e-52 208.8 136 69.9
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 3.3e-51 206.5 136 69.1
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 7.4e-51 205.3 149 62.4
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.6e-50 204.1 136 68.4
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-48 197.6 133 67.7
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 2.6e-48 196.8 133 67.7
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 2.6e-48 196.8 133 67.7
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-47 194.5 233 46.4
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-47 194.1 132 67.4
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-47 194.1 132 67.4
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-47 194.1 132 67.4
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-47 194.1 132 67.4
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 5.0e-47 192.6 133 69.2
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 5.0e-47 192.6 133 69.2
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 1.1e-46 191.4 132 66.7
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 1.9e-46 190.7 132 66.7
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.2e-46 189.9 132 66.7
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 7.2e-46 188.7 132 65.9
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.0e-44 184.9 134 65.7
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.0e-44 184.9 333 37.5
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 8.7e-44 181.8 228 45.6
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 8.7e-44 181.8 189 51.9
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.8e-41 174.1 319 35.1
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.3e-39 167.9 159 54.7
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 6.5e-39 165.6 133 63.2
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 4.6e-37 159.5 158 47.5
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-35 154.8 131 58.8
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 2.5e-35 153.7 108 68.5
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 9.7e-35 151.8 139 52.5
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.2e-34 150.6 165 50.3
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.1e-33 146.7 151 52.3
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.5e-32 144.4 74 83.8
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.4e-32 143.3 157 54.1
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.3e-31 141.4 151 51.7
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.5e-31 138.7 84 78.6
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 8.5e-31 138.7 129 60.5
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.7e-29 133.7 138 47.8
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.3e-28 130.6 139 52.5
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.0e-28 130.2 272 35.7
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 3.0e-28 130.2 167 43.1
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.8e-26 123.6 166 43.4
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 3.7e-26 123.2 124 47.6
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.1e-25 121.7 137 43.1
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 5.3e-25 119.4 228 36.0
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 5.3e-25 119.4 188 42.0
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 7.7e-24 115.5 149 40.9
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.9e-22 110.9 159 41.5
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-21 108.2 158 39.9
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 3.6e-21 106.7 62 75.8
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 4.7e-21 106.3 77 62.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 3.0e-20 103.6 63 71.4
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-12 78.6 51 74.5
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-12 78.6 51 74.5
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.0e-12 78.6 106 44.3
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.3e-12 77.4 51 72.5
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.0e-12 76.6 51 74.5
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.1e-09 68.6 53 56.6


User provided reference genes

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