Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2212 Ceratophyllum demersum HOM05D002535 ORTHO05D006846 1.6e-124 449.5 233 100.0
MBI04_g09825_MAGBIO Magnolia biondii HOM05D002535 ORTHO05D006846 3.9e-59 232.3 226 57.1
Actinidia08716 Actinidia chinensis HOM05D002535 ORTHO05D006846 1.1e-58 230.7 170 67.1
DCAR_010560 Daucus carota HOM05D002535 ORTHO05D006846 2.5e-58 229.6 228 54.4
CSS0041054 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D006846 4.8e-57 225.3 230 55.7
PSO063G0674 Papaver somniferum HOM05D002535 ORTHO05D006846 4.0e-56 222.2 240 51.7
GSVIVG01038675001 Vitis vinifera HOM05D002535 ORTHO05D006846 9.0e-56 221.1 171 63.7
Cfa016132 Carpinus fangiana HOM05D002535 ORTHO05D006846 1.2e-55 220.7 229 52.8
TAR375G1062 Trochodendron aralioides HOM05D002535 ORTHO05D006846 3.4e-55 219.2 171 64.3
RcHm_v2.0_Chr1g0383251 Rosa chinensis HOM05D002535 ORTHO05D006846 4.5e-55 218.8 231 52.8
Migut.F00161 Erythranthe guttata HOM05D002535 ORTHO05D006846 7.6e-55 218.0 224 51.8
Manes.18G108000 Manihot esculenta HOM05D002535 ORTHO05D006846 2.2e-54 216.5 230 51.3
CiPaw.05G208400 Carya illinoinensis HOM05D002535 ORTHO05D006846 2.9e-54 216.1 230 52.2
QL09p006081 Quercus lobata HOM05D002535 ORTHO05D006846 2.9e-54 216.1 172 62.2
RcHm_v2.0_Chr1g0334571 Rosa chinensis HOM05D002535 ORTHO05D006846 2.9e-54 216.1 231 52.4
Lj1C1030G8 Lonicera japonica HOM05D002535 ORTHO05D006846 3.8e-54 215.7 212 54.2
Duzib084G0662 Durio zibethinus HOM05D002535 ORTHO05D006846 1.1e-53 214.2 225 53.8
Atru.chr12.2530 Acer truncatum HOM05D002535 ORTHO05D006846 1.9e-53 213.4 207 52.7
CANSAT21G0133 Cannabis sativa HOM05D002535 ORTHO05D006846 2.4e-53 213.0 229 52.8
MD07G1302400 Malus domestica HOM05D002535 ORTHO05D006846 2.4e-53 213.0 225 52.0
Atru.chr12.2507 Acer truncatum HOM05D002535 ORTHO05D006846 3.2e-53 212.6 207 52.7
FvH4_7g33260 Fragaria vesca HOM05D002535 ORTHO05D006846 3.2e-53 212.6 227 52.4
LjContig00155g0000379 Lotus japonicus HOM05D002535 ORTHO05D006846 3.2e-53 212.6 227 52.4
Oeu055378.1 Olea europaea HOM05D002535 ORTHO05D006846 5.5e-53 211.8 220 51.4
Cpa.g.sc3.180 Carica papaya HOM05D002535 ORTHO05D006846 7.1e-53 211.5 237 51.5
Haze_00328 Corylus avellana HOM05D002535 ORTHO05D006846 7.1e-53 211.5 250 48.4
Cc01_g06440 Coffea canephora HOM05D002535 ORTHO05D006846 9.3e-53 211.1 227 49.8
Medtr5g068600 Medicago truncatula HOM05D002535 ORTHO05D006846 1.2e-52 210.7 230 50.9
Potri.012G005000 Populus trichocarpa HOM05D002535 ORTHO05D006846 1.2e-52 210.7 224 50.9
Rhsim03G0218100 Rhododendron simsii HOM05D002535 ORTHO05D006846 1.2e-52 210.7 171 60.8
Gorai.008G263400 Gossypium raimondii HOM05D002535 ORTHO05D006846 1.6e-52 210.3 225 51.6
Ca_05547_v3 Cicer arietinum L. HOM05D002535 ORTHO05D006846 2.7e-52 209.5 225 51.1
PGR142G0839 Punica granatum HOM05D002535 ORTHO05D006846 2.7e-52 209.5 171 63.7
Hund21077 Selenicereus undatus HOM05D002535 ORTHO05D006846 3.5e-52 209.1 174 60.9
Aqoxy5G04389 Aquilegia oxysepala HOM05D002535 ORTHO05D006846 4.6e-52 208.8 227 49.3
FAN01G2729 Fragaria x ananassa HOM05D002535 ORTHO05D006846 4.6e-52 208.8 225 50.7
SalBow6G2866 Salvia bowleyana HOM05D002535 ORTHO05D006846 4.6e-52 208.8 228 49.6
THA.LOC104825164 Tarenaya hassleriana HOM05D002535 ORTHO05D006846 4.6e-52 208.8 228 52.2
Gohir.A12G245000 Gossypium hirsutum HOM05D002535 ORTHO05D006846 6.0e-52 208.4 225 51.6
Nn1g09652 Nelumbo nucifera HOM05D002535 ORTHO05D006846 1.3e-51 207.2 171 62.0
Thhalv10012724m.g Eutrema salsugineum HOM05D002535 ORTHO05D006846 1.8e-51 206.8 225 49.8
FAN03G0390 Fragaria x ananassa HOM05D002535 ORTHO05D006846 2.3e-51 206.5 227 51.1
Gohir.D12G245800 Gossypium hirsutum HOM05D002535 ORTHO05D006846 2.3e-51 206.5 225 51.1
Sc19g0000400 Simmondsia chinensis HOM05D002535 ORTHO05D006846 2.3e-51 206.5 228 50.9
AT5G54090 Arabidopsis thaliana HOM05D002535 ORTHO05D006846 3.9e-51 205.7 229 48.5
vmacro06471 Vaccinium macrocarpon HOM05D002535 ORTHO05D006846 3.9e-51 205.7 228 50.4
AL8G29210 Arabidopsis lyrata HOM05D002535 ORTHO05D006846 5.1e-51 205.3 225 49.3
CARHR267280 Cardamine hirsuta HOM05D002535 ORTHO05D006846 6.7e-51 204.9 229 48.5
arahy.Tifrunner.gnm1.ann1.DLGH4W Arachis hypogaea HOM05D002535 ORTHO05D006846 1.9e-50 203.4 230 50.4
arahy.Tifrunner.gnm1.ann1.HMHY7M Arachis hypogaea HOM05D002535 ORTHO05D006846 1.9e-50 203.4 229 49.3
COL.COLO4_14395 Corchorus olitorius HOM05D002535 ORTHO05D006846 1.9e-50 203.4 225 50.7
unitig_748.g7357 Utricularia gibba HOM05D002535 ORTHO05D006846 1.9e-50 203.4 227 49.8
Zm00001eb220610 Zea mays HOM05D002535 ORTHO05D006846 1.9e-50 203.4 225 47.6
Os10g0509000 Oryza sativa ssp. japonica HOM05D002535 ORTHO05D006846 3.3e-50 202.6 228 48.2
Lsat_1_v5_gn_2_5220 Lactuca sativa HOM05D002535 ORTHO05D006846 4.3e-50 202.2 170 60.6
ECA238G0251 Erigeron canadensis HOM05D002676 ORTHO05D006846 5.6e-50 201.8 168 60.1
Lalb_Chr10g0103021 Lupinus albus HOM05D002535 ORTHO05D006846 5.6e-50 201.8 230 50.9
C02p17660 Brassica napus HOM05D002535 ORTHO05D006846 7.4e-50 201.4 225 48.4
Carub.0008s1437 Capsella rubella HOM05D002535 ORTHO05D006846 7.4e-50 201.4 232 47.0
Ciclev10018840m.g Citrus clementina HOM05D002535 ORTHO05D006846 7.4e-50 201.4 161 61.5
FAN10G2813 Fragaria x ananassa HOM05D002535 ORTHO05D006846 7.4e-50 201.4 227 49.8
Glyma.02G221300 Glycine max HOM05D002535 ORTHO05D006846 7.4e-50 201.4 232 50.0
Sabra12G0000700 Salix brachista HOM05D002535 ORTHO05D006846 7.4e-50 201.4 211 52.1
Sp6g16120 Schrenkiella parvula HOM05D002535 ORTHO05D006846 7.4e-50 201.4 226 49.1
ATR0579G153 Amborella trichopoda HOM05D002535 ORTHO05D006846 1.3e-49 200.7 180 60.0
Ah.13g071000 Amaranthus hybridus HOM05D002535 ORTHO05D006846 2.1e-49 199.9 239 48.1
BcaB05g22108 Brassica carinata HOM05D002535 ORTHO05D006846 2.1e-49 199.9 177 55.4
Nitab4.5_0000021g0180 Nicotiana tabacum HOM05D002535 ORTHO05D006846 2.1e-49 199.9 240 48.8
A02p10580 Brassica napus HOM05D002535 ORTHO05D006846 2.8e-49 199.5 225 48.0
BraA02t06123Z Brassica rapa HOM05D002535 ORTHO05D006846 2.8e-49 199.5 225 48.0
Solyc03g080010.3 Solanum lycopersicum HOM05D002535 ORTHO05D006846 2.8e-49 199.5 214 51.4
BcaC03g14353 Brassica carinata HOM05D002535 ORTHO05D006846 4.8e-49 198.7 225 47.6
Prupe.2G321600 Prunus persica HOM05D002535 ORTHO05D006846 4.8e-49 198.7 225 50.2
TWI39G1073 Tripterygium wilfordii HOM05D002535 ORTHO05D006846 1.4e-48 197.2 200 53.0
AUR62005953 Chenopodium quinoa HOM05D002535 ORTHO05D006846 1.8e-48 196.8 219 48.9
Phvul.008G188400 Phaseolus vulgaris HOM05D002535 ORTHO05D006846 3.1e-48 196.1 205 52.2
MELO3C024845.2 Cucumis melo HOM05D002535 ORTHO05D006846 6.9e-48 194.9 229 48.9
CsaV3_4G009720 Cucumis sativus L. HOM05D002535 ORTHO05D006846 6.9e-48 194.9 209 51.2
Nitab4.5_0004582g0020 Nicotiana tabacum HOM05D002535 ORTHO05D006846 1.5e-47 193.7 237 47.3
CAN.G303.52 Capsicum annuum HOM05D002535 ORTHO05D006846 3.4e-47 192.6 238 47.5
EL10Ac3g05139 Beta vulgaris HOM05D002535 ORTHO05D006846 5.8e-47 191.8 244 47.1
CSS0030602 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D006846 5.8e-47 191.8 233 51.5
BolC2t07896H Brassica oleracea HOM05D002535 ORTHO05D006846 7.6e-47 191.4 236 45.8
Sed0019266 Sechium edule HOM05D002535 ORTHO05D006846 1.0e-46 191.0 227 45.8
HanXRQChr14g0452381 Helianthus annuus HOM05D002535 ORTHO05D006846 2.9e-46 189.5 214 48.1
Sabra12G0007000 Salix brachista HOM05D002535 ORTHO05D006846 6.5e-46 188.3 208 49.5
Eucgr.K00458 Eucalyptus grandis HOM05D002535 ORTHO05D006846 1.1e-45 187.6 240 47.9
Psat0s1274g0080 Pisum sativum HOM05D002535 ORTHO05D006846 1.6e-44 183.7 226 46.5
Peaxi162Scf01026g00257 Petunia axillaris HOM05D002535 ORTHO05D006846 2.1e-44 183.3 237 44.3
Aa31LG3G9940 Aethionema arabicum HOM05D002535 ORTHO05D006846 6.0e-44 181.8 211 49.3
ClCG07G009730 Citrullus lanatus HOM05D002535 ORTHO05D006846 1.3e-41 174.1 230 43.0
Thecc.03G211600 Theobroma cacao HOM05D002535 ORTHO05D006846 3.7e-41 172.6 116 71.6
Psat7g096120 Pisum sativum HOM05D002535 ORTHO05D006846 5.3e-40 168.7 237 43.5
Sopen03g021730 Solanum pennellii HOM05D002535 ORTHO05D006846 9.0e-40 167.9 115 68.7
Hma1.2p1_0115F.1_g055700 Hydrangea macrophylla HOM05D002535 ORTHO05D006846 2.6e-39 166.4 196 47.4
Pp3c5_20780 Physcomitrium patens HOM05D002535 ORTHO05D006846 3.9e-35 152.5 177 45.8
SGA_v2.0_scaffold44G16838 Striga asiatica HOM05D002535 ORTHO05D006846 3.9e-35 152.5 226 41.2
Mapoly0023s0121 Marchantia polymorpha HOM05D002535 ORTHO05D006846 6.7e-35 151.8 228 43.9
HPP92_007410 Vanilla planifolia HOM05D002535 ORTHO05D006846 1.7e-33 147.1 94 74.5
CBR_g37825 Chara braunii HOM05D002535 ORTHO05D006846 2.5e-29 133.3 169 43.8
CBR_g57073 Chara braunii HOM05D002535 ORTHO05D006846 1.8e-27 127.1 156 42.9
TPR.G5829 Trifolium pratense HOM05D002535 ORTHO05D006846 2.4e-24 116.7 173 41.6
BolC3t18713H Brassica oleracea HOM05D002535 ORTHO05D018607 6.9e-24 115.2 86 60.5
C03p64550 Brassica napus HOM05D002535 ORTHO05D018607 4.5e-23 112.5 84 59.5
BcaC01g05095 Brassica carinata HOM05D002535 ORTHO05D006846 2.2e-22 110.2 115 47.8
C03p30400 Brassica napus HOM05D002535 ORTHO05D018607 3.8e-22 109.4 84 57.1
TPR.G15887 Trifolium pratense HOM05D002535 ORTHO05D006846 2.7e-20 103.2 58 79.3
SMO239G0005 Selaginella moellendorffii HOM05D002535 ORTHO05D006846 1.0e-19 101.3 127 41.7
MCO04G146 Micromonas commoda HOM05D002535 ORTHO05D006846 3.9e-19 99.4 141 40.4
BcaC01g02455 Brassica carinata HOM05D002535 ORTHO05D018607 8.8e-19 98.2 64 68.8
Cre01.g040350 Chlamydomonas reinhardtii HOM05D002535 ORTHO05D006846 1.7e-17 94.0 155 34.2
Glyma.14G188900 Glycine max HOM05D002535 ORTHO05D006846 4.8e-17 92.4 58 74.1
Mapoly0028s0103 Marchantia polymorpha HOM05D002535 ORTHO05D008858 1.2e-15 87.8 129 41.9
Pp3c17_13780 Physcomitrium patens HOM05D002535 ORTHO05D008858 2.0e-15 87.0 166 34.3
Pp3c17_13784 Physcomitrium patens HOM05D002535 ORTHO05D008858 2.0e-15 87.0 166 34.3
AagrBONN_evm.TU.Sc2ySwM_228.5759 Anthoceros agrestis HOM05D002535 ORTHO05D008858 4.5e-15 85.9 223 30.0
PGSC0003DMG400000575 Solanum tuberosum HOM05D002535 ORTHO05D006846 6.5e-14 82.0 156 36.5
CBR_g16855 Chara braunii HOM05D002535 ORTHO05D008858 3.2e-13 79.7 168 34.5
PRCOL_00007048 Prasinoderma coloniale HOM05D002535 ORTHO05D006846 5.5e-13 79.0 160 31.2
PSO782G1442 Papaver somniferum HOM05D002535 ORTHO05D006846 3.6e-12 76.3 141 39.7
unitig_32.g10980 Utricularia gibba HOM05D002535 ORTHO05D008858 1.0e-11 74.7 202 27.2
ATR0680G182 Amborella trichopoda HOM05D002535 ORTHO05D008858 1.8e-11 73.9 122 33.6
SMO361G0591 Selaginella moellendorffii HOM05D002535 ORTHO05D008858 1.8e-11 73.9 178 28.7
VMungo0251G2893 Vigna mungo HOM05D002535 ORTHO05D008858 4.0e-11 72.8 193 26.9
arahy.Tifrunner.gnm1.ann1.UAEH3Q Arachis hypogaea HOM05D002535 ORTHO05D008858 5.2e-11 72.4 206 28.2
Glyma.07G195700 Glycine max HOM05D002535 ORTHO05D008858 6.7e-11 72.0 194 27.8
MBI18_g16997_MAGBIO Magnolia biondii HOM05D002535 ORTHO05D008858 6.7e-11 72.0 199 26.6
TPR.G12122 Trifolium pratense HOM05D002535 ORTHO05D008858 8.8e-11 71.6 113 33.6
Atru.BG.303.p Acer truncatum HOM05D002535 ORTHO05D008858 1.2e-10 71.2 171 29.8
Ciclev10014268m.g Citrus clementina HOM05D002535 ORTHO05D008858 1.2e-10 71.2 116 37.1
PGR004G2583 Punica granatum HOM05D002535 ORTHO05D008858 1.5e-10 70.9 113 34.5
Migut.M01151 Erythranthe guttata HOM05D002535 ORTHO05D008858 2.0e-10 70.5 225 25.3
arahy.Tifrunner.gnm1.ann1.B9F9XG Arachis hypogaea HOM05D002535 ORTHO05D008858 2.6e-10 70.1 206 27.7
Cre01.g014800 Chlamydomonas reinhardtii HOM05D002535 ORTHO05D008858 3.3e-10 69.7 79 44.3
Actinidia05620 Actinidia chinensis HOM05D002535 ORTHO05D008858 5.7e-10 68.9 230 24.8
Medtr4g088920 Medicago truncatula HOM05D002535 ORTHO05D008858 7.5e-10 68.6 185 29.2
Oeu005075.2 Olea europaea HOM05D002535 ORTHO05D008858 7.5e-10 68.6 183 27.9
CANSAT35G1983 Cannabis sativa HOM05D002535 ORTHO05D008858 9.7e-10 68.2 226 28.3
Psat7g112600 Pisum sativum HOM05D002535 ORTHO05D008858 9.7e-10 68.2 157 26.1
CDE09G0049 Ceratophyllum demersum HOM05D002535 ORTHO05D008858 1.3e-09 67.8 226 26.5
MELO3C002594.2 Cucumis melo HOM05D002535 ORTHO05D008858 1.3e-09 67.8 203 27.1
Lalb_Chr09g0327621 Lupinus albus HOM05D002535 ORTHO05D008858 1.3e-09 67.8 193 26.9
Phvul.002G228200 Phaseolus vulgaris HOM05D002535 ORTHO05D008858 1.3e-09 67.8 210 27.1
Sed0021234 Sechium edule HOM05D002535 ORTHO05D008858 1.3e-09 67.8 203 27.1
Hund23717 Selenicereus undatus HOM05D002535 ORTHO05D008858 1.3e-09 67.8 66 47.0
Cc02_g13230 Coffea canephora HOM05D002535 ORTHO05D008858 1.7e-09 67.4 173 28.3
Nitab4.5_0019564g0010 Nicotiana tabacum HOM05D002535 ORTHO05D008858 1.7e-09 67.4 76 42.1
SEGI_27553 Sequoiadendron giganteum HOM05D002535 ORTHO05D008858 1.7e-09 67.4 118 34.7
SEGI_29257 Sequoiadendron giganteum HOM05D002535 ORTHO05D008858 1.7e-09 67.4 118 34.7
CsaV3_1G012200 Cucumis sativus L. HOM05D002535 ORTHO05D008858 2.2e-09 67.0 203 27.1
Lj4g0015787 Lotus japonicus HOM05D002535 ORTHO05D008858 2.2e-09 67.0 196 26.0
CSS0043844 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D008858 2.8e-09 66.6 193 26.9
PSO675G0269 Papaver somniferum HOM05D002535 ORTHO05D008858 2.8e-09 66.6 169 26.6
Rhsim13G0176900 Rhododendron simsii HOM05D002535 ORTHO05D008858 2.8e-09 66.6 203 25.6
Cfa000431 Carpinus fangiana HOM05D002535 ORTHO05D008858 3.7e-09 66.2 76 42.1
DCAR_028087 Daucus carota HOM05D002535 ORTHO05D008858 4.8e-09 65.9 103 33.0
Ca_18537_v3 Cicer arietinum L. HOM05D002535 ORTHO05D008858 6.3e-09 65.5 192 27.6
CiPaw.10G047500 Carya illinoinensis HOM05D002535 ORTHO05D008858 8.2e-09 65.1 199 27.1
Haze_06485 Corylus avellana HOM05D002535 ORTHO05D008858 8.2e-09 65.1 113 33.6
Peaxi162Scf00947g00117 Petunia axillaris HOM05D002535 ORTHO05D008858 1.8e-08 63.9 164 28.0
PGSC0003DMG400022387 Solanum tuberosum HOM05D002535 ORTHO05D008858 1.8e-08 63.9 164 28.7
Ah.14g089380 Amaranthus hybridus HOM05D002535 ORTHO05D008858 2.4e-08 63.5 66 42.4
HanXRQChr16g0517721 Helianthus annuus HOM05D002535 ORTHO05D008858 2.4e-08 63.5 118 31.4
QL05p039941 Quercus lobata HOM05D002535 ORTHO05D008858 2.4e-08 63.5 160 28.8
Sabra04G0026000 Salix brachista HOM05D002535 ORTHO05D008858 2.4e-08 63.5 224 27.2
Solyc02g078390.3 Solanum lycopersicum HOM05D002535 ORTHO05D008858 2.4e-08 63.5 118 32.2
Sopen02g023250 Solanum pennellii HOM05D002535 ORTHO05D008858 2.4e-08 63.5 118 32.2
Eucgr.D00632 Eucalyptus grandis HOM05D002535 ORTHO05D008858 3.1e-08 63.2 168 28.0
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 4.1e-08 62.8 228 25.4
CAN.G1164.16 Capsicum annuum HOM05D002535 ORTHO05D008858 5.3e-08 62.4 164 26.2
ClCG03G005960 Citrullus lanatus HOM05D002535 ORTHO05D008858 7.0e-08 62.0 204 26.0
Potri.004G041900 Populus trichocarpa HOM05D002535 ORTHO05D008858 1.6e-07 60.8 203 24.1
Sc05g0007740 Simmondsia chinensis HOM05D002535 ORTHO05D008858 1.6e-07 60.8 66 40.9
Thecc.06G189600 Theobroma cacao HOM05D002535 ORTHO05D008858 1.6e-07 60.8 207 24.6
EL10Ac8g20367 Beta vulgaris HOM05D002535 ORTHO05D008858 2.0e-07 60.5 195 24.1
AUR62016995 Chenopodium quinoa HOM05D002535 ORTHO05D008858 2.0e-07 60.5 174 25.9
Gorai.011G026900 Gossypium raimondii HOM05D002535 ORTHO05D008858 2.0e-07 60.5 157 26.1
Manes.17G044100 Manihot esculenta HOM05D002535 ORTHO05D008858 2.0e-07 60.5 205 26.8
Gohir.D10G025600 Gossypium hirsutum HOM05D002535 ORTHO05D008858 3.5e-07 59.7 157 24.8
MCO15G337 Micromonas commoda HOM05D002535 ORTHO05D008858 4.5e-07 59.3 169 29.0
AUR62014804 Chenopodium quinoa HOM05D002535 ORTHO05D008858 5.9e-07 58.9 174 25.9
Thhalv10022461m.g Eutrema salsugineum HOM05D002535 ORTHO05D008858 8.5e-06 55.1 202 20.8


User provided reference genes

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