Gene: COL.COLO4_31493
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_31493
- Transcript Identifier COL.rna30208
- Gene Type Coding gene
- Location AWUE01020855.1 : 129041-137935 : negative
Gene Family Information
- ID HOM05D005670
- #Genes/#Species 136/95
- Phylogenetic origin
- ID ORTHO05D008858
- #Genes/#Species 113/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna30208
- GenBank OMO65175.1
- id gene31465
- gene_name COLO4_31493
- uniprot A0A1R3H485
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | GOA Database | mismatch repair | |
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0006995 | ISO | PLAZA Integrative Orthology | cellular response to nitrogen starvation | AT4G04955 |
| GO:0010136 | ISO | PLAZA Integrative Orthology | ureide catabolic process | AT4G04955 |
| GO:0006145 | ISO | PLAZA Integrative Orthology | purine nucleobase catabolic process | AT4G04955 |
| GO:0045910 | IEA | GOA Database | negative regulation of DNA recombination | |
| GO:0045910 | IEA | InterPro | negative regulation of DNA recombination | |
| GO:0000256 | IEA | GOA Database | allantoin catabolic process | |
| GO:0000256 | IEA | InterPro | allantoin catabolic process | |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity | |
| GO:0004519 | IEA | GOA Database | endonuclease activity | |
| GO:0004519 | IEA | InterPro | endonuclease activity | |
| GO:0050897 | IEA | GOA Database | cobalt ion binding | |
| GO:0050897 | IEA | InterPro | cobalt ion binding | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0004038 | IEA | GOA Database | allantoinase activity | |
| GO:0004038 | IEA | InterPro | allantoinase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0016787 | IEA | InterPro | hydrolase activity | |
| GO:0016810 | IEA | GOA Database | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | |
| GO:0016810 | IEA | InterPro | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | |
| GO:0030983 | IEA | GOA Database | mismatched DNA binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005783 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum | AT4G04955 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G65070 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR045076 | DNA mismatch repair MutS family |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011059 | Metal-dependent hydrolase, composite domain superfamily |
| IPR032466 | Metal-dependent hydrolase |
| IPR036063 | Smr domain superfamily |
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR006680 | Amidohydrolase-related |
| IPR017593 | Allantoinase |
| IPR002625 | Smr domain |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| IPR005747 | Endonuclease MutS2 |
| IPR007696 | DNA mismatch repair protein MutS, core |
| Mapman id | Description |
|---|---|
| 6.1.5.7 | Nucleotide metabolism.purines.catabolism.allantoinase |