Gene: AT5G54090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G54090
  • Transcript Identifier AT5G54090.1
  • Gene Type Coding gene
  • Location Chr5 : 21948283-21952550 : negative

Gene Family Information

  • ID HOM05D002535
  • #Genes/#Species 268/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G54090.1
  • uniprot F4JYU0

Descriptions

  • Description DNA mismatch repair protein MutS, type 2
  • Computational description DNA mismatch repair protein MutS, type 2; FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, maintenance of fidelity involved in DNA-dependent DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, type 2 (InterPro:IPR005747), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein MutS, type 2 (TAIR:AT1G65070.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045910
IEA
Gene Ontologynegative regulation of DNA recombination
GO:0045910
IEA
InterPronegative regulation of DNA recombination
GO:0006298
IEA
Gene Ontologymismatch repair
GO:0006298
IEA
InterPromismatch repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0004519
IEA
Gene Ontologyendonuclease activity
GO:0004519
IEA
InterProendonuclease activity
GO:0030983
IEA
GOA Databasemismatched DNA binding
GO:0030983
IBA
Gene Ontologymismatched DNA binding1
GO:0030983
IEA
InterPromismatched DNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0008094
IBA
Gene OntologyATPase, acting on DNA1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032300
IBA
Gene Ontologymismatch repair complex1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR007696 DNA mismatch repair protein MutS, core
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR045076 DNA mismatch repair MutS family
IPR005747 Endonuclease MutS2
Mapman id Description
35.1 not assigned.annotated