Gene: Solyc02g078390.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g078390.3
  • Transcript Identifier Solyc02g078390.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 41070471-41075439 : negative

Gene Family Information

  • ID HOM05D002535
  • #Genes/#Species 268/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g078390.3.1
  • uniprot A0A3Q7F3Z4
  • gene_id Solyc02g078390

Descriptions

  • Description DNA mismatch repair protein MutS (AHRD V3.3 *** A0A200PQX6_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006298
IEA
GOA Databasemismatch repair
GO:0006298
IEA
InterPromismatch repair
GO:0045910
IEA
GOA Databasenegative regulation of DNA recombination
GO:0045910
IEA
InterPronegative regulation of DNA recombination
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0000256
IEA
GOA Databaseallantoin catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
GOA Databasenuclease activity
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0030983
IBA
IEA
GOA Databasemismatched DNA binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016810
IEA
GOA Databasehydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050897
IEA
GOA Databasecobalt ion binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004519
IEA
InterProendonuclease activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0004038
IEA
GOA Databaseallantoinase activity
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G65070
GO:0032300
IBA
GOA Databasemismatch repair complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
IPR007696 DNA mismatch repair protein MutS, core
IPR002625 Smr domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR005747 Endonuclease MutS2
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR045076 DNA mismatch repair MutS family
IPR036063 Smr domain superfamily
Mapman id Description
35.1 not assigned.annotated