Gene: Sopen02g023250
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g023250
- Transcript Identifier Sopen02g023250.2
- Gene Type Coding gene
- Location Spenn-ch02 : 46661096-46666092 : negative
Gene Family Information
- ID HOM05D002535
- #Genes/#Species 268/98
- Phylogenetic origin
- ID ORTHO05D008858
- #Genes/#Species 113/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen02g023250.2
Descriptions
- Description DNA mismatch repair protein MutS, type 2 | FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding | INVOLVED IN: mismatch repair, maintenance of fidelity involved in DNA-dependent DNA replication | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, core , DNA mismatch repair protein MutS, type 2 , DNA mismatch repair protein MutS, C-terminal , Smr protein/MutS2 C-terminal | BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein MutS, type 2 .
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0045910 | IEA | InterPro | negative regulation of DNA recombination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding | |
| GO:0004519 | IEA | InterPro | endonuclease activity | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G65070 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR007696 | DNA mismatch repair protein MutS, core |
| IPR002625 | Smr domain |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| IPR036063 | Smr domain superfamily |
| IPR045076 | DNA mismatch repair MutS family |
| IPR005747 | Endonuclease MutS2 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |