Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 0.0e+00 1644.4 930 100.0
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.3e-69 267.7 769 32.2
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.4e-67 261.5 816 30.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 8.5e-65 253.1 769 30.0
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.5e-64 252.3 770 32.7
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.5e-64 250.4 773 30.9
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.6e-63 247.7 779 30.3
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.7e-63 247.3 771 30.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 6.1e-63 246.9 768 30.9
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 6.1e-63 246.9 774 30.2
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 8.0e-63 246.5 766 31.5
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 8.0e-63 246.5 768 30.6
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.0e-62 244.2 765 29.3
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 5.2e-62 243.8 769 29.4
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.8e-62 243.4 771 30.4
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 6.8e-62 243.4 794 29.8
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.8e-62 243.0 768 31.9
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-61 242.7 768 31.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.0e-61 241.9 785 30.6
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-61 241.9 776 30.9
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 2.6e-61 241.5 768 30.6
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 4.4e-61 240.7 770 30.4
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 9.8e-61 239.6 786 30.4
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.8e-61 239.6 768 31.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 9.8e-61 239.6 772 29.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.3e-60 239.2 766 31.5
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-60 239.2 763 31.2
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.2e-60 238.4 773 30.3
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 3.7e-60 237.7 765 29.4
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 4.8e-60 237.3 769 28.6
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 6.3e-60 236.9 761 30.7
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 8.3e-60 236.5 770 30.4
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.1e-59 236.1 812 31.2
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.1e-59 236.1 773 29.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.1e-59 236.1 784 29.3
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.8e-59 235.3 769 30.7
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 2.4e-59 235.0 785 30.2
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 7.0e-59 233.4 787 29.4
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 9.1e-59 233.0 787 29.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.0e-58 231.9 785 28.7
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.5e-58 231.1 737 31.6
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.5e-58 230.7 765 28.9
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 4.5e-58 230.7 771 31.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 4.5e-58 230.7 778 30.3
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 5.9e-58 230.3 768 28.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.7e-58 229.9 789 28.5
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 7.7e-58 229.9 784 29.6
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.0e-57 229.6 774 30.1
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.3e-57 229.2 773 29.2
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.3e-57 229.2 777 29.7
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.7e-57 228.8 765 29.5
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.2e-57 228.4 778 27.8
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.9e-57 228.0 779 28.9
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.9e-57 228.0 773 31.0
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.8e-57 227.6 765 28.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.8e-57 227.6 769 29.9
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 6.5e-57 226.9 798 31.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.1e-56 226.1 775 28.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-56 226.1 773 28.2
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.5e-56 225.7 777 28.8
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.5e-56 225.7 770 29.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.5e-56 224.9 760 28.9
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.5e-56 224.9 763 28.6
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.5e-56 224.9 785 28.9
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.5e-56 224.9 771 30.2
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 4.2e-56 224.2 769 29.0
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 4.2e-56 224.2 769 29.0
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 5.5e-56 223.8 771 29.6
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 5.5e-56 223.8 774 30.9
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 7.2e-56 223.4 774 28.7
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 7.2e-56 223.4 777 30.0
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 9.4e-56 223.0 762 28.5
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.2e-55 222.6 772 29.1
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.2e-55 222.6 778 29.3
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.6e-55 222.2 767 28.4
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 2.1e-55 221.9 768 29.3
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.6e-55 221.1 760 28.4
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 4.7e-55 220.7 766 29.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.7e-55 220.7 769 29.3
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 6.1e-55 220.3 770 27.5
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 6.1e-55 220.3 778 29.9
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 6.1e-55 220.3 765 29.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 8.0e-55 219.9 768 27.6
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 8.0e-55 219.9 772 29.9
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 8.0e-55 219.9 790 29.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.0e-54 219.5 774 29.6
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-54 219.2 770 27.5
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.4e-54 219.2 770 27.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 4.0e-54 217.6 764 28.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 4.0e-54 217.6 774 28.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 5.2e-54 217.2 776 27.2
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 6.8e-54 216.9 770 26.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 6.8e-54 216.9 778 29.7
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 8.8e-54 216.5 770 29.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-53 215.3 770 27.1
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.0e-53 215.3 791 27.3
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.6e-53 214.9 793 28.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 4.4e-53 214.2 768 29.4
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 4.4e-53 214.2 793 29.0
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.4e-53 214.2 701 32.1
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 5.7e-53 213.8 765 28.9
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 9.8e-53 213.0 765 27.7
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 9.8e-53 213.0 764 28.9
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.7e-52 212.2 770 28.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.7e-52 212.2 770 28.4
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.7e-52 212.2 776 28.5
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 3.7e-52 211.1 781 28.0
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 3.1e-51 208.0 710 30.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.1e-51 207.6 791 28.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 7.0e-51 206.8 792 27.8
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.8e-46 192.2 766 26.5
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.6e-45 188.3 202 49.0
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 9.8e-45 186.4 762 27.3
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 2.9e-44 184.9 771 26.1
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.1e-43 183.0 252 43.7
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.8e-43 182.2 710 28.3
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.2e-42 179.5 682 29.5
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.0e-41 176.4 268 40.7
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.0e-41 176.4 709 29.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.7e-41 175.6 780 24.4
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.9e-41 174.5 285 39.3
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.5e-40 172.6 242 40.1
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.5e-40 171.8 674 28.6
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 3.6e-39 167.9 273 38.8
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 6.2e-39 167.2 276 39.5
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 4.4e-37 161.0 225 43.6
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 2.4e-35 155.2 769 26.5
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 3.5e-34 151.4 792 28.7
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 6.6e-33 147.1 188 47.9
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-30 139.8 770 23.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.7e-28 131.3 169 43.8
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 4.9e-28 131.0 183 42.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.1e-27 127.9 144 47.9
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.1e-27 127.9 144 47.9
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 9.2e-27 126.7 150 42.0
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.7e-26 125.2 166 41.6
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 4.3e-24 117.9 134 47.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 5.2e-22 110.9 624 26.4
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-19 103.2 109 48.6
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 7.1e-19 100.5 108 49.1
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.6e-18 99.4 579 26.6
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 7.8e-18 97.1 171 36.8
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.3e-17 95.5 171 36.3
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 5.1e-17 94.4 171 36.3
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 5.1e-09 67.8 162 32.1
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 9.6e-08 63.5 60 51.7
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 1.8e-06 59.3 103 35.0


User provided reference genes

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