Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 2.2e-243 845.5 528 100.0
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 7.0e-165 584.7 528 76.3
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 8.5e-94 348.6 237 68.4
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 9.1e-88 328.6 256 60.9
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 2.6e-87 327.0 234 64.5
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.0e-86 325.1 232 65.9
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-86 324.7 235 64.7
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.2e-85 320.1 238 63.4
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 7.2e-85 318.9 238 62.6
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 2.7e-84 317.0 232 64.7
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 4.7e-84 316.2 234 63.2
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 4.7e-84 316.2 234 63.2
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.4e-83 314.7 239 63.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 6.7e-83 312.4 234 61.5
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.5e-82 311.2 234 63.2
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.0e-82 310.8 247 59.1
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 2.0e-82 310.8 234 62.4
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.6e-82 310.5 235 62.1
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 4.4e-82 309.7 237 61.6
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 5.7e-82 309.3 235 62.1
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 5.7e-82 309.3 234 62.4
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.7e-82 309.3 234 62.4
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.3e-81 308.1 234 62.0
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.7e-81 307.8 240 60.4
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.7e-81 307.8 234 61.5
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 1.7e-81 307.8 235 62.6
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.2e-81 307.4 232 62.5
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.2e-81 307.4 248 60.1
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 2.2e-81 307.4 232 62.5
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 2.2e-81 307.4 232 62.5
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 2.8e-81 307.0 248 60.1
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.8e-81 307.0 238 60.9
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 4.8e-81 306.2 262 58.0
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 4.8e-81 306.2 237 60.3
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 6.3e-81 305.8 233 62.7
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 6.3e-81 305.8 248 61.7
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.3e-81 305.8 234 61.5
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.3e-81 305.8 234 61.5
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 6.3e-81 305.8 234 61.5
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 6.3e-81 305.8 234 61.5
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 6.3e-81 305.8 234 61.5
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 8.2e-81 305.4 235 61.7
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 8.2e-81 305.4 234 62.0
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 8.2e-81 305.4 234 61.5
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 8.2e-81 305.4 235 60.9
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.4e-80 304.7 257 58.8
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.4e-80 304.7 234 62.0
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.8e-80 304.3 232 61.6
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.8e-80 304.3 232 61.6
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.4e-80 303.9 232 60.8
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 2.4e-80 303.9 234 60.7
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.4e-80 303.9 245 58.4
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.4e-80 303.9 239 60.7
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 3.1e-80 303.5 235 63.0
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 3.1e-80 303.5 248 61.3
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 3.1e-80 303.5 248 61.7
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 4.1e-80 303.1 233 61.4
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 5.3e-80 302.8 234 62.4
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 5.3e-80 302.8 234 62.8
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 7.0e-80 302.4 234 62.8
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 7.0e-80 302.4 234 62.8
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 7.0e-80 302.4 234 62.8
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 7.0e-80 302.4 234 61.1
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 9.1e-80 302.0 234 62.4
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 9.1e-80 302.0 238 59.7
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 9.1e-80 302.0 234 62.8
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 9.1e-80 302.0 265 58.1
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.2e-79 301.6 231 61.0
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.2e-79 301.6 231 60.6
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.5e-79 301.2 234 62.4
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 2.0e-79 300.8 235 61.3
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 2.0e-79 300.8 231 61.0
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.0e-79 300.8 234 60.3
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 2.0e-79 300.8 232 61.6
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 3.5e-79 300.1 232 61.2
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 3.5e-79 300.1 234 62.4
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 3.5e-79 300.1 233 61.4
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 3.5e-79 300.1 233 60.9
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 5.9e-79 299.3 259 57.5
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.7e-79 298.9 234 62.0
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-78 298.5 232 60.8
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-78 298.5 232 60.8
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.0e-78 298.5 234 59.4
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.3e-78 298.1 234 59.8
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.7e-78 297.7 240 58.3
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.7e-78 297.7 235 60.4
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.7e-78 297.7 234 58.5
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.9e-78 297.0 259 56.8
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.9e-78 297.0 232 59.9
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.8e-78 296.6 234 59.4
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 3.8e-78 296.6 234 59.0
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 5.0e-78 296.2 232 59.9
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 5.0e-78 296.2 232 59.9
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 5.0e-78 296.2 234 61.5
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 6.5e-78 295.8 231 60.6
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 6.5e-78 295.8 234 58.5
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 8.5e-78 295.4 231 59.7
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.1e-77 295.0 235 59.6
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.1e-77 295.0 274 53.3
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-77 294.3 234 61.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.9e-77 294.3 234 59.0
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-77 293.5 234 61.5
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 4.2e-77 293.1 234 59.0
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 5.5e-77 292.7 232 59.9
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.1e-76 290.8 235 58.7
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 8.0e-76 288.9 238 59.7
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.4e-75 288.1 242 57.4
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.8e-75 287.7 286 51.4
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 5.2e-75 286.2 238 59.2
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.1e-74 285.0 225 60.4
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-74 284.6 235 60.9
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.6e-74 283.9 277 53.1
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 3.3e-74 283.5 232 59.1
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.3e-73 281.6 215 62.8
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.1e-72 278.5 231 58.4
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-72 278.1 249 55.8
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.4e-72 278.1 233 56.7
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 2.4e-72 277.3 237 56.5
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 4.1e-72 276.6 245 55.5
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 5.3e-72 276.2 236 57.2
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-71 274.6 235 57.4
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-70 271.2 235 56.2
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 5.0e-70 269.6 225 59.1
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 5.0e-70 269.6 241 56.4
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.5e-69 268.1 245 55.1
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-69 267.7 235 55.3
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 2.5e-69 267.3 188 66.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 4.0e-67 260.0 230 58.3
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 2.0e-66 257.7 239 53.6
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 3.4e-66 256.9 221 57.0
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 4.8e-65 253.1 238 52.1
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 5.3e-64 249.6 238 50.8
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 7.0e-64 249.2 238 50.8
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 9.1e-64 248.8 240 51.7
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 2.0e-63 247.7 238 50.8
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.8e-62 243.4 238 50.0
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 6.5e-62 242.7 238 50.0
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 6.5e-62 242.7 238 50.0
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 6.5e-62 242.7 238 50.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-61 241.1 238 49.6
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-61 241.1 238 49.6
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 3.2e-61 240.4 252 48.0
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 6.1e-60 236.1 239 51.0
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 8.0e-60 235.7 237 50.6
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 7.5e-58 229.2 255 46.3
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 2.2e-57 227.6 222 51.4
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 2.8e-57 227.3 257 46.3
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 2.8e-57 227.3 227 48.9
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 8.3e-57 225.7 171 62.0
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.8e-56 224.6 244 46.7
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-53 214.5 203 54.2
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 7.2e-53 212.6 356 37.4
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 9.5e-53 212.2 178 58.4
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.7e-50 203.0 149 62.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.7e-49 200.3 137 64.2
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.2e-47 195.3 235 43.8
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.6e-47 194.9 137 63.5
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.5e-45 187.6 154 61.0
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.2e-44 185.3 149 58.4
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.0e-43 182.2 245 40.4
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 3.4e-42 177.2 214 45.3
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 2.9e-41 174.1 237 42.6
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.4e-40 171.8 234 41.9
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 5.4e-40 169.9 243 42.0
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.0e-38 165.6 261 40.2
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 6.6e-38 162.9 228 38.6
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 5.6e-37 159.8 130 60.8
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 2.6e-34 151.0 149 48.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 9.8e-34 149.1 152 46.1
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.1e-27 129.0 235 35.7
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.4e-27 128.6 107 57.9
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.3e-25 122.1 123 55.3
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.7e-25 121.7 138 46.4
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 3.2e-24 117.5 77 64.9
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 9.2e-24 115.9 105 54.3
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 9.2e-24 115.9 139 43.9
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 1.7e-22 111.7 96 57.3
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 6.6e-22 109.8 84 63.1
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-16 91.7 90 46.7
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 9.6e-13 79.3 69 53.6
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 1.6e-12 78.6 44 77.3
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.9e-11 73.2 87 41.4
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 1.2e-07 62.4 36 77.8
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.2e-07 62.4 51 58.8
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.2e-07 62.4 51 58.8
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.7e-07 61.2 51 56.9
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.6e-07 60.5 51 58.8


User provided reference genes

Program Settings