Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 0.0e+00 3127.0 1663 100.0
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1229.5 1532 47.3
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1206.4 1563 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1156.4 1515 45.6
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1092.4 1515 43.4
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1078.5 1506 41.8
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 2.0e-306 1056.6 1517 41.3
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 4.4e-306 1055.4 1586 40.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 1.7e-305 1053.5 1519 40.6
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 9.2e-304 1047.7 1527 40.7
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 1.7e-302 1043.5 1582 40.5
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 1.9e-301 1040.0 1538 39.8
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 4.3e-301 1038.9 1533 40.2
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 7.3e-301 1038.1 1561 39.8
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 9.5e-301 1037.7 1499 41.2
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 9.5e-301 1037.7 1577 40.4
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 2.1e-300 1036.6 1529 40.2
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 3.1e-299 1032.7 1542 40.5
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 4.0e-299 1032.3 1552 40.5
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 4.4e-298 1028.9 1537 40.3
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 1.3e-297 1027.3 1532 40.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 2.2e-297 1026.5 1569 39.8
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 1.6e-295 1020.4 1544 39.9
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 2.1e-295 1020.0 1581 39.7
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 2.1e-295 1020.0 1536 39.9
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 3.5e-295 1019.2 1543 39.7
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 4.6e-295 1018.8 1529 39.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 7.8e-295 1018.1 1523 39.7
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 1.3e-294 1017.3 1552 39.2
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 1.3e-294 1017.3 1538 39.7
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.7e-294 1016.9 1514 40.2
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 2.3e-294 1016.5 1519 40.8
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 3.0e-294 1016.1 1539 39.8
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 1.1e-293 1014.2 1532 40.3
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 3.3e-293 1012.7 1532 39.7
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 4.3e-293 1012.3 1532 39.6
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 4.3e-293 1012.3 1536 39.6
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 7.3e-293 1011.5 1553 40.1
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 6.2e-292 1008.4 1540 39.7
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 3.1e-291 1006.1 1534 40.3
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 4.0e-291 1005.7 1583 39.0
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 2.6e-290 1003.0 1515 40.6
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 2.6e-290 1003.0 1526 40.2
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 3.4e-290 1002.7 1535 39.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 7.6e-290 1001.5 1526 40.2
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 9.9e-290 1001.1 1578 39.3
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 9.9e-290 1001.1 1551 39.5
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 1.3e-289 1000.7 1510 39.7
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 1.7e-289 1000.3 1516 40.0
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.2e-289 1000.0 1530 39.9
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 4.9e-289 998.8 1517 40.2
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 4.9e-289 998.8 1526 39.8
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 4.9e-289 998.8 1517 39.8
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 2.4e-288 996.5 1530 39.9
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 4.2e-288 995.7 1532 39.0
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 4.2e-288 995.7 1587 38.6
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 7.1e-288 995.0 1458 40.6
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 9.3e-288 994.6 1532 39.6
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 1.6e-287 993.8 1567 38.9
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 2.7e-287 993.0 1534 39.1
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 2.7e-287 993.0 1554 39.2
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 2.7e-287 993.0 1561 39.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.5e-287 992.6 1506 39.9
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 4.6e-287 992.3 1526 39.5
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 6.0e-287 991.9 1507 39.7
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 7.8e-287 991.5 1532 39.4
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 1.0e-286 991.1 1532 39.0
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 1.0e-286 991.1 1586 39.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 5.1e-286 988.8 1567 39.2
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 2.5e-285 986.5 1564 39.0
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 4.3e-285 985.7 1587 38.2
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 9.6e-285 984.6 1533 39.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 2.8e-284 983.0 1531 38.7
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 2.8e-284 983.0 1531 38.7
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 4.8e-284 982.2 1517 39.2
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 6.2e-284 981.9 1539 38.9
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 8.1e-284 981.5 1514 39.5
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 3.1e-283 979.5 1521 39.8
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 4.0e-283 979.2 1501 39.8
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 2.4e-280 969.9 1520 39.0
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.2e-279 967.6 1526 39.6
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 1.2e-279 967.6 1335 42.5
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 7.9e-279 964.9 1529 38.7
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 7.9e-279 964.9 1529 38.7
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 6.6e-278 961.8 1522 39.4
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.3e-276 957.6 1606 37.7
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 2.8e-276 956.4 1631 38.2
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 6.0e-271 938.7 1541 37.4
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 4.3e-269 932.6 1522 38.3
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 8.1e-268 928.3 1499 38.5
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 7.1e-264 915.2 1515 37.6
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 1.6e-263 914.1 1599 37.5
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 3.9e-262 909.4 1533 37.0
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-259 901.0 1537 37.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 2.0e-258 897.1 1454 38.9
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 3.0e-254 883.2 1513 37.3
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.1e-251 873.2 1403 38.2
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 1.3e-244 851.3 1563 35.6
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.4e-221 773.1 933 47.6
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.8e-214 751.1 932 45.8
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 6.8e-214 749.2 1150 38.9
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.9e-185 653.7 938 42.1
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 5.6e-176 623.2 899 41.0
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 3.1e-166 590.9 966 38.1
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 9.0e-142 509.6 774 39.0
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 3.6e-138 497.7 675 43.0
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.2e-107 394.8 480 45.0
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.5e-100 370.5 468 43.8
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.2e-93 349.7 509 41.3
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.0e-88 332.4 653 33.4
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.9e-87 327.8 422 44.1
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 9.5e-83 313.5 563 35.7
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 4.1e-78 298.1 442 41.2
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.7e-76 292.7 285 56.5
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.4e-73 283.1 492 36.0
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.8e-73 282.7 472 38.1
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 2.6e-72 278.9 1547 23.2
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.7e-69 268.9 452 35.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 7.8e-69 267.3 564 34.6
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 6.8e-65 254.2 440 35.7
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.9e-62 246.1 376 37.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 6.2e-58 231.1 462 34.2
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 8.4e-55 220.7 265 47.2
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.9e-51 209.5 270 40.4
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.2e-47 196.1 514 27.8
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.6e-45 189.9 328 36.0
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 4.9e-39 168.3 330 33.6
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.1e-25 124.0 403 26.1
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 3.1e-25 122.5 141 47.5
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 9.4e-22 110.9 160 41.9
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.5e-16 93.6 367 25.3
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 4.5e-16 92.0 95 48.4
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 1.9e-14 86.7 70 58.6
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.6e-13 83.6 128 35.2
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 6.1e-13 81.6 93 46.2
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 3.0e-12 79.3 94 44.7
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.5e-11 77.0 78 51.3
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 9.7e-11 74.3 80 41.2
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.3e-10 73.9 69 55.1
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 3.7e-10 72.4 69 53.6
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.1e-09 70.9 63 47.6
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-09 70.5 78 44.9
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.8e-09 70.1 97 38.1
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.8e-09 70.1 53 62.3
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.1e-09 69.3 185 25.9
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.2e-08 67.4 108 34.3
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.2e-07 63.2 151 31.1
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.9e-06 60.1 41 63.4


User provided reference genes

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