Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 2579.7 1281 100.0
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 2434.8 1285 94.3
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 2433.3 1281 93.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 2394.8 1268 93.2
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 2361.3 1271 91.6
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 2353.6 1267 91.6
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 2346.6 1273 91.2
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 2344.7 1273 91.3
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 2338.1 1279 90.9
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 2334.3 1281 90.8
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 2326.2 1275 90.7
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 2310.8 1281 89.9
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 2068.1 1273 79.3
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 2021.9 1272 79.2
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1853.2 1276 70.5
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1824.7 1275 69.9
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1813.9 1273 70.1
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1810.8 1275 68.9
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1801.6 1275 68.8
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1795.4 1275 68.7
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1773.4 1275 67.6
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1772.3 1274 67.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1767.3 1274 67.3
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1763.4 1281 67.1
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1763.0 1284 68.1
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1761.9 1277 68.0
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1760.7 1275 68.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1758.4 1280 67.0
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1748.4 1275 67.1
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1747.3 1277 67.9
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1745.3 1276 66.5
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1743.0 1279 67.6
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1739.2 1279 67.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1731.1 1277 67.0
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1727.6 1276 66.1
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1725.7 1279 66.8
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1721.8 1278 66.8
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1718.4 1280 65.5
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1716.0 1279 65.0
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1707.6 1280 65.1
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1706.4 1276 66.8
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1278 66.4
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1704.5 1277 66.0
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1701.4 1278 66.4
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1699.1 1278 66.4
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1697.9 1277 65.4
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1697.2 1280 64.6
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1695.6 1304 65.3
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1693.3 1277 64.8
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1693.3 1279 65.1
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1691.0 1279 64.9
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1691.0 1276 65.8
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1690.2 1281 65.6
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1683.7 1244 67.0
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1676.8 1277 65.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1676.4 1279 65.1
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1673.7 1277 64.8
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1662.1 1279 63.9
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1655.2 1275 64.5
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1653.3 1275 64.2
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1651.0 1279 63.6
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1651.0 1278 63.9
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1643.6 1283 63.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1637.9 1291 63.3
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1630.9 1274 63.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1629.0 1245 64.7
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1627.8 1277 62.4
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1627.1 1281 63.2
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1618.2 1380 59.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1614.4 1283 62.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1609.7 1279 61.8
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1607.4 1355 59.1
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1605.1 1282 61.2
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1604.3 1275 62.9
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1601.6 1275 62.7
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1578.9 1282 60.6
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1562.4 1271 60.3
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1555.0 1277 60.1
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1551.2 1374 58.5
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1548.5 1277 59.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1543.5 1280 61.2
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1538.9 1213 62.9
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1534.6 1180 64.1
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1500.7 1274 58.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1499.6 1273 59.5
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1495.7 1185 64.0
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1438.3 1041 66.8
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1437.9 1279 56.7
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1407.9 1042 65.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1397.9 1033 68.1
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1371.3 1276 54.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1365.9 1046 64.1
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1346.3 1269 55.9
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1337.4 1273 53.4
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1281.5 1181 55.5
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1261.9 1274 53.8
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1204.9 1226 51.5
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1157.1 829 68.3
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1149.0 940 61.7
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1117.4 1320 47.0
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1103.6 816 68.9
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1102.4 876 60.8
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1099.3 1269 47.1
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1092.8 1325 46.6
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1089.3 831 63.8
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.6e-309 1064.7 941 59.0
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.8e-307 1059.7 1196 47.9
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.4e-307 1059.3 1322 45.9
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.4e-296 1022.7 833 60.5
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.6e-295 1020.0 1142 49.6
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.6e-295 1020.0 941 57.4
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 2.1e-295 1019.6 765 66.1
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 8.2e-284 981.1 777 61.6
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.9e-277 959.9 769 63.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.4e-261 905.6 691 65.7
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 3.3e-224 783.1 1507 35.1
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.1e-210 737.3 627 59.6
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.8e-202 708.8 614 56.2
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.2e-194 684.9 552 62.7
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-190 671.8 501 68.1
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 6.4e-180 636.0 501 60.1
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 3.3e-176 623.6 465 67.7
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.0e-124 452.6 329 69.6
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 6.1e-122 443.4 366 63.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 6.8e-121 439.9 404 58.2
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.5e-112 412.1 336 62.8
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.9e-103 380.6 1432 26.8
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.7e-84 318.9 1237 26.2
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.3e-76 292.7 263 57.4
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 5.7e-51 207.6 269 45.4
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.4e-41 175.6 152 58.6
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 5.0e-39 167.9 154 58.4
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 3.7e-26 125.2 112 58.0
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 4.1e-25 121.7 78 71.8
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.3e-15 90.1 53 84.9
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.9e-15 89.0 53 83.0
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.1e-13 82.8 56 73.2
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 2.7e-13 82.4 67 58.2
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 8.0e-13 80.9 48 83.3
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 1.4e-12 80.1 48 83.3
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 5.2e-12 78.2 48 81.2
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 5.2e-12 78.2 48 81.2
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 8.8e-12 77.4 46 78.3
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 5.7e-11 74.7 50 68.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.5e-11 74.3 102 40.2
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.3e-10 73.6 44 79.5
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 4.8e-10 71.6 50 70.0
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 4.8e-10 71.6 185 30.3
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 6.3e-10 71.2 158 31.6
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 7.0e-09 67.8 117 37.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.9e-08 64.7 179 32.4
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.3e-07 62.8 80 45.0
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 2.9e-07 62.4 41 75.6
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 5.0e-07 61.6 141 29.8
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.9e-06 59.7 86 38.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 7.2e-06 57.8 181 29.3


User provided reference genes

Program Settings