Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 2.6e-91 339.0 204 100.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.5e-83 313.2 204 93.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.9e-82 308.9 204 91.2
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.1e-81 307.0 204 89.7
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 2.1e-80 302.8 200 89.5
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.2e-77 293.5 204 87.3
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.1e-76 290.4 204 87.3
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 8.9e-76 287.3 204 86.3
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 3.4e-75 285.4 204 85.3
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.7e-74 283.1 204 83.8
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 2.7e-72 275.8 200 83.5
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 3.0e-71 272.3 200 83.5
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 83.5
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 3.9e-71 271.9 200 83.5
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 5.1e-71 271.6 201 83.6
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.1e-70 270.4 201 83.6
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.9e-70 269.6 204 80.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.5e-70 269.2 278 67.3
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 4.3e-70 268.5 221 68.8
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.6e-69 266.5 202 81.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.6e-69 266.5 201 82.6
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.6e-69 265.4 202 81.2
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 8.1e-69 264.2 201 81.1
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 8.1e-69 264.2 201 81.1
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.4e-68 262.7 201 80.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 82.1
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 4.0e-68 261.9 197 82.7
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 6.9e-68 261.2 204 82.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 6.9e-68 261.2 203 79.3
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 82.6
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 83.1
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 81.6
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.0e-67 259.6 200 80.0
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.6e-67 259.2 200 80.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 2.6e-67 259.2 200 80.0
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 2.6e-67 259.2 200 80.0
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 2.6e-67 259.2 200 83.0
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 81.5
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 79.5
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 7.6e-67 257.7 200 81.0
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.7e-66 256.5 201 80.6
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.7e-66 256.5 194 83.5
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.2e-66 256.1 203 81.3
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.2e-66 256.1 203 81.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 4.9e-66 255.0 201 79.1
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 8.4e-66 254.2 203 79.3
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 8.4e-66 254.2 203 80.8
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 8.4e-66 254.2 201 80.6
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.1e-65 253.8 201 76.1
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.1e-65 253.8 200 81.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 2.4e-65 252.7 203 77.8
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 7.1e-65 251.1 203 79.3
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 7.1e-65 251.1 200 73.5
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 9.3e-65 250.8 202 79.2
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.2e-64 250.4 206 75.7
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.6e-64 250.0 203 78.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.6e-64 250.0 202 80.2
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 3.5e-64 248.8 200 77.5
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 7.9e-64 247.7 201 77.6
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 7.9e-64 247.7 201 77.6
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 7.9e-64 247.7 195 82.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.0e-63 247.3 200 75.5
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.0e-63 247.3 203 78.8
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.0e-63 247.3 204 76.5
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.3e-63 246.9 201 79.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.3e-63 246.1 194 82.5
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 2.3e-63 246.1 203 78.3
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 3.0e-63 245.7 198 77.8
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.9e-63 245.4 203 76.4
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 3.9e-63 245.4 202 76.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.1e-63 245.0 199 78.9
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 5.1e-63 245.0 200 78.5
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 8.7e-63 244.2 200 78.5
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 8.7e-63 244.2 203 76.8
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.5e-62 243.4 202 75.7
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.9e-62 243.0 199 78.4
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.9e-62 243.0 212 75.0
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-62 243.0 201 78.6
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-62 243.0 201 78.6
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.5e-62 242.7 201 78.1
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.5e-62 242.7 212 75.0
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.6e-62 241.5 212 74.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.3e-61 240.4 203 75.4
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.6e-61 240.0 199 71.4
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.6e-61 240.0 201 76.6
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.6e-61 238.8 201 75.1
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 3.6e-61 238.8 238 68.5
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 4.8e-61 238.4 200 77.0
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.2e-61 238.0 205 77.1
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 1.1e-60 237.3 202 75.7
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.1e-60 237.3 204 76.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.4e-60 236.9 201 74.6
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.4e-60 236.9 202 77.2
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.8e-60 236.5 202 67.8
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.4e-60 236.1 205 73.7
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 3.1e-60 235.7 200 76.5
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.9e-60 234.6 200 75.5
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.2e-59 233.8 170 87.1
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.9e-58 229.2 153 77.8
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 4.9e-58 228.4 154 77.3
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 8.4e-58 227.6 196 73.5
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.4e-57 226.9 201 71.1
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.1e-56 223.0 199 71.9
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 7.9e-56 221.1 196 71.9
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.3e-54 215.7 161 84.5
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 3.1e-52 209.1 195 73.3
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.9e-52 208.0 196 71.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.8e-51 204.9 200 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.7e-50 203.4 146 67.1
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.2e-49 199.1 143 66.4
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.2e-49 198.7 292 51.0
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.7e-48 196.1 200 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.5e-48 195.7 139 69.1
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.8e-47 193.4 203 61.6
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 2.3e-47 193.0 110 84.5
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 6.7e-47 191.4 200 68.0
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.6e-45 186.8 193 69.9
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.9e-43 178.3 117 76.1
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 4.6e-40 168.7 227 61.2
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.9e-39 165.6 145 65.5
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.1e-36 157.5 143 57.3
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.5e-35 153.7 123 84.6
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-33 147.5 123 67.5
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.2e-33 146.0 210 58.6
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.7e-32 142.9 226 53.1
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.1e-30 137.5 226 41.2
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 6.3e-29 131.7 280 47.1
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.5e-27 127.1 203 42.4
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.2e-23 112.1 150 46.0
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 7.0e-20 101.7 210 42.9
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 4.7e-16 89.0 95 72.6
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 4.0e-15 85.9 90 74.4
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 6.7e-15 85.1 204 37.3
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.2e-11 74.3 46 82.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.1e-09 67.8 163 28.2


User provided reference genes

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