Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR070500 Cardamine hirsuta HOM05D000572 ORTHO05D002399 3.6e-135 485.0 248 100.0
CARHR182510 Cardamine hirsuta HOM05D000572 ORTHO05D002399 1.0e-121 440.3 252 91.3
Thhalv10003514m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 6.3e-92 341.3 247 73.3
AL8G22690 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 2.0e-90 336.3 255 70.6
AT5G49160 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 2.8e-87 325.9 226 74.3
CARHR287820 Cardamine hirsuta HOM05D000572 ORTHO05D002399 1.4e-86 323.6 253 71.1
Carub.0008s0898 Capsella rubella HOM05D000572 ORTHO05D002399 5.2e-86 321.6 245 69.0
Thhalv10005683m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 3.2e-83 312.4 257 66.1
Sp4g01970 Schrenkiella parvula HOM05D000572 ORTHO05D002399 7.0e-83 311.2 249 68.3
Sp2g19890 Schrenkiella parvula HOM05D000572 ORTHO05D002399 1.3e-81 307.0 259 64.9
AL7G42360 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 2.5e-80 302.8 243 67.1
THA.LOC104823726 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 1.2e-79 300.4 250 64.4
AT4G14140 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.6e-79 300.1 250 64.4
AL7G42980 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 1.8e-78 296.6 244 68.0
AT4G08990 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 6.8e-78 294.7 242 63.6
THA.LOC104820805 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 6.8e-78 294.7 250 62.8
BcaC07g41015 Brassica carinata HOM05D000572 ORTHO05D002399 8.9e-78 294.3 260 63.8
Aa31LG11G8250 Aethionema arabicum HOM05D000572 ORTHO05D002399 4.4e-77 292.0 258 63.2
C08p40170 Brassica napus HOM05D000572 ORTHO05D002399 7.5e-77 291.2 262 63.0
BolC8t51587H Brassica oleracea HOM05D000572 ORTHO05D002399 9.8e-77 290.8 262 63.0
A09p57170 Brassica napus HOM05D000572 ORTHO05D002399 2.9e-76 289.3 263 62.7
BraA09t41110Z Brassica rapa HOM05D000572 ORTHO05D002399 2.9e-76 289.3 263 62.7
Haze_19377 Corylus avellana HOM05D000572 ORTHO05D002399 8.3e-76 287.7 251 58.6
Carub.0004s0387 Capsella rubella HOM05D000572 ORTHO05D002399 1.9e-75 286.6 257 62.6
Dinv19128 Davidia involucrata HOM05D000572 ORTHO05D002399 4.1e-75 285.4 242 61.2
Cpa.g.sc37.192 Carica papaya HOM05D000572 ORTHO05D002399 2.1e-74 283.1 243 61.7
QL10p035076 Quercus lobata HOM05D000572 ORTHO05D002399 1.3e-73 280.4 240 60.0
Thecc.01G144800 Theobroma cacao HOM05D000572 ORTHO05D002399 5.1e-73 278.5 251 58.2
Ciclev10027585m.g Citrus clementina HOM05D000572 ORTHO05D002399 8.6e-73 277.7 220 64.1
MD15G1231100 Malus domestica HOM05D000572 ORTHO05D002399 8.6e-73 277.7 245 60.0
Lj3g0025806 Lotus japonicus HOM05D000572 ORTHO05D002399 1.9e-72 276.6 243 60.5
CiPaw.12G053900 Carya illinoinensis HOM05D000572 ORTHO05D002399 2.5e-72 276.2 246 56.9
PGR119G1310 Punica granatum HOM05D000572 ORTHO05D002399 3.3e-72 275.8 225 61.3
Cc07_g19880 Coffea canephora HOM05D000572 ORTHO05D002399 4.3e-72 275.4 222 62.6
Duzib147G0313 Durio zibethinus HOM05D000572 ORTHO05D002399 4.3e-72 275.4 246 59.8
Gohir.A05G373000 Gossypium hirsutum HOM05D000572 ORTHO05D002399 5.6e-72 275.0 246 58.9
Prupe.7G183100 Prunus persica HOM05D000572 ORTHO05D002399 7.3e-72 274.6 243 59.7
Peaxi162Scf01053g00039 Petunia axillaris HOM05D000572 ORTHO05D002399 9.5e-72 274.2 242 58.7
Dinv29674 Davidia involucrata HOM05D000572 ORTHO05D002399 1.6e-71 273.5 243 59.3
Lj2g0020412 Lotus japonicus HOM05D000572 ORTHO05D002399 1.6e-71 273.5 243 60.1
CARHR185430 Cardamine hirsuta HOM05D000572 ORTHO05D002399 2.1e-71 273.1 256 59.4
BraA04t17374Z Brassica rapa HOM05D000572 ORTHO05D002399 2.8e-71 272.7 264 60.6
Manes.13G119400 Manihot esculenta HOM05D000572 ORTHO05D002399 6.2e-71 271.6 246 56.5
Manes.13G155232 Manihot esculenta HOM05D000572 ORTHO05D002399 1.8e-70 270.0 250 54.8
Eucgr.I00036 Eucalyptus grandis HOM05D000572 ORTHO05D002399 5.2e-70 268.5 243 56.8
Gorai.012G048000 Gossypium raimondii HOM05D000572 ORTHO05D002399 5.2e-70 268.5 246 57.3
Glyma.06G178200 Glycine max HOM05D000572 ORTHO05D002399 6.8e-70 268.1 246 58.9
Lalb_Chr01g0008651 Lupinus albus HOM05D000572 ORTHO05D002399 6.8e-70 268.1 252 57.1
Hund15395 Selenicereus undatus HOM05D000572 ORTHO05D002399 8.9e-70 267.7 247 57.1
VMungo0464G1362 Vigna mungo HOM05D000572 ORTHO05D002399 8.9e-70 267.7 247 57.5
Gohir.D04G042500 Gossypium hirsutum HOM05D000572 ORTHO05D002399 1.2e-69 267.3 246 57.7
Rhsim11G0118300 Rhododendron simsii HOM05D000572 ORTHO05D002399 2.0e-69 266.5 242 58.3
Nitab4.5_0004640g0010 Nicotiana tabacum HOM05D000572 ORTHO05D002399 2.6e-69 266.2 242 55.8
BcaB06g27851 Brassica carinata HOM05D000572 ORTHO05D002399 3.4e-69 265.8 265 58.9
BolC4t26803H Brassica oleracea HOM05D000572 ORTHO05D002399 3.4e-69 265.8 266 58.6
CSS0016257 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 3.4e-69 265.8 245 57.6
CSS0042457 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 3.4e-69 265.8 245 57.6
BcaC02g08585 Brassica carinata HOM05D000572 ORTHO05D002399 4.4e-69 265.4 266 58.6
MD02G1115100 Malus domestica HOM05D000572 ORTHO05D002399 9.9e-69 264.2 245 56.7
Atru.chr1.1803 Acer truncatum HOM05D000572 ORTHO05D002399 1.3e-68 263.8 248 55.6
TPR.G37134 Trifolium pratense HOM05D000572 ORTHO05D002399 1.3e-68 263.8 239 58.6
Nitab4.5_0004345g0030 Nicotiana tabacum HOM05D000572 ORTHO05D002399 1.7e-68 263.5 242 55.4
Medtr6g065580 Medicago truncatula HOM05D000572 ORTHO05D002399 2.2e-68 263.1 246 57.3
ECA236G0624 Erigeron canadensis HOM05D000572 ORTHO05D002399 2.9e-68 262.7 218 61.0
CAN.G1330.38 Capsicum annuum HOM05D000572 ORTHO05D002399 3.7e-68 262.3 242 57.0
Ca_03350_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 4.9e-68 261.9 225 58.7
CsaV3_5G013990 Cucumis sativus L. HOM05D000572 ORTHO05D002399 4.9e-68 261.9 245 55.5
AUR62043444 Chenopodium quinoa HOM05D000572 ORTHO05D002399 6.4e-68 261.5 247 55.9
HanXRQChr11g0347301 Helianthus annuus HOM05D000572 ORTHO05D002399 6.4e-68 261.5 239 58.2
MBI03_g20877_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 8.3e-68 261.2 245 54.7
MELO3C026448.2 Cucumis melo HOM05D000572 ORTHO05D002399 1.1e-67 260.8 245 55.1
HanXRQChr04g0120041 Helianthus annuus HOM05D000572 ORTHO05D002399 1.4e-67 260.4 242 58.3
TWI15G0599 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 1.4e-67 260.4 223 59.2
vmacro01683 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 1.4e-67 260.4 250 57.2
C04p52290 Brassica napus HOM05D000572 ORTHO05D002399 1.9e-67 260.0 236 61.9
Lj2A766T19 Lonicera japonica HOM05D000572 ORTHO05D002399 1.9e-67 260.0 225 56.9
Lalb_Chr03g0033391 Lupinus albus HOM05D000572 ORTHO05D002399 1.9e-67 260.0 247 57.1
Lj5g0006387 Lotus japonicus HOM05D000572 ORTHO05D002399 2.4e-67 259.6 244 57.4
Sc02g0000170 Simmondsia chinensis HOM05D000572 ORTHO05D002399 2.4e-67 259.6 224 58.5
Solyc11g030600.3 Solanum lycopersicum HOM05D000572 ORTHO05D002399 2.4e-67 259.6 242 55.8
TWI63G0302 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 2.4e-67 259.6 243 56.8
ClCG11G000400 Citrullus lanatus HOM05D000572 ORTHO05D002399 5.4e-67 258.5 251 53.4
DCAR_009626 Daucus carota HOM05D000572 ORTHO05D002399 5.4e-67 258.5 220 58.6
EL10Ac8g18295 Beta vulgaris HOM05D000572 ORTHO05D002399 1.2e-66 257.3 224 56.2
Medtr2g046020 Medicago truncatula HOM05D000572 ORTHO05D002399 1.2e-66 257.3 252 55.6
Sopen11g013460 Solanum pennellii HOM05D000572 ORTHO05D002399 1.2e-66 257.3 242 55.8
Lsat_1_v5_gn_7_75121 Lactuca sativa HOM05D000572 ORTHO05D002399 1.6e-66 256.9 240 58.3
SGA_v2.0_scaffold8G04469 Striga asiatica HOM05D000572 ORTHO05D002399 2.1e-66 256.5 242 57.0
Glyma.04G187600 Glycine max HOM05D000572 ORTHO05D002399 2.7e-66 256.1 224 58.5
CDE12G0633 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 3.5e-66 255.8 249 53.0
Nn5g27348 Nelumbo nucifera HOM05D000572 ORTHO05D002399 3.5e-66 255.8 248 52.8
Nn5g27349 Nelumbo nucifera HOM05D000572 ORTHO05D002399 3.5e-66 255.8 248 52.8
AUR62021310 Chenopodium quinoa HOM05D000572 ORTHO05D002399 4.6e-66 255.4 247 54.3
Oeu032220.1 Olea europaea HOM05D000572 ORTHO05D002399 4.6e-66 255.4 244 56.1
Potri.004G134000 Populus trichocarpa HOM05D000572 ORTHO05D002399 4.6e-66 255.4 247 52.6
Sed0009647 Sechium edule HOM05D000572 ORTHO05D002399 4.6e-66 255.4 243 54.7
arahy.Tifrunner.gnm1.ann1.I0VWWF Arachis hypogaea HOM05D000572 ORTHO05D002399 7.8e-66 254.6 214 60.3
DCAR_019941 Daucus carota HOM05D000572 ORTHO05D002399 7.8e-66 254.6 221 57.0
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.3e-65 253.8 234 56.8
arahy.Tifrunner.gnm1.ann1.5512QZ Arachis hypogaea HOM05D000572 ORTHO05D002399 2.3e-65 253.1 214 59.8
Ah.04g152120 Amaranthus hybridus HOM05D000572 ORTHO05D002399 3.9e-65 252.3 224 56.7
Sabra04G0084200 Salix brachista HOM05D000572 ORTHO05D002399 3.9e-65 252.3 252 52.4
Atru.chr12.1878 Acer truncatum HOM05D000572 ORTHO05D002399 5.1e-65 251.9 246 54.1
MSTRG.27892 Avicennia marina HOM05D000572 ORTHO05D002399 5.1e-65 251.9 244 57.8
Phvul.004G133200 Phaseolus vulgaris HOM05D000572 ORTHO05D002399 6.6e-65 251.5 250 52.4
Potri.018G138000 Populus trichocarpa HOM05D000572 ORTHO05D002399 6.6e-65 251.5 254 50.8
CANSAT01G1917 Cannabis sativa HOM05D000572 ORTHO05D002399 1.5e-64 250.4 248 54.4
VMungo0464G1539 Vigna mungo HOM05D000572 ORTHO05D002399 2.1e-63 246.5 246 54.5
Potri.T046100 Populus trichocarpa HOM05D000572 ORTHO05D002399 2.8e-63 246.1 273 48.7
PSO210G2968 Papaver somniferum HOM05D000572 ORTHO05D002399 4.7e-63 245.4 246 55.7
Sabra19G0000100 Salix brachista HOM05D000572 ORTHO05D002399 6.2e-63 245.0 249 49.4
PSO447G0024 Papaver somniferum HOM05D000572 ORTHO05D002399 1.8e-62 243.4 251 54.6
TPR.G31040 Trifolium pratense HOM05D000572 ORTHO05D002399 2.4e-62 243.0 246 52.8
DCAR_003283 Daucus carota HOM05D000572 ORTHO05D002399 8.9e-62 241.1 235 53.6
TAR628G1524 Trochodendron aralioides HOM05D000572 ORTHO05D002399 1.5e-61 240.4 250 50.8
SGA_v2.0_scaffold122G33283 Striga asiatica HOM05D000572 ORTHO05D002399 2.0e-61 240.0 221 59.7
Thhalv10000011m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 9.9e-61 237.7 230 58.7
Zm00001eb301620 Zea mays HOM05D000572 ORTHO05D002399 9.9e-61 237.7 225 54.2
Aqoxy7G03579 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 1.3e-60 237.3 240 55.0
SHI05188 Sapria himalayana HOM05D000572 ORTHO05D002399 1.3e-60 237.3 225 56.0
Zm00001eb301630 Zea mays HOM05D000572 ORTHO05D002399 2.2e-60 236.5 225 53.8
Lj5A282T76 Lonicera japonica HOM05D000572 ORTHO05D002399 3.8e-60 235.7 243 51.4
RcHm_v2.0_Chr2g0097141 Rosa chinensis HOM05D000572 ORTHO05D002399 6.4e-60 235.0 233 51.5
Carub.0007s2893 Capsella rubella HOM05D000572 ORTHO05D002399 2.4e-59 233.0 247 55.9
Aqoxy7G03575 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 3.2e-59 232.6 242 54.5
FAN26G0750 Fragaria x ananassa HOM05D000572 ORTHO05D002399 3.2e-59 232.6 246 50.8
AUR62028017 Chenopodium quinoa HOM05D000572 ORTHO05D002399 4.2e-59 232.3 247 50.2
Migut.N00875 Erythranthe guttata HOM05D000572 ORTHO05D002399 7.1e-59 231.5 222 58.6
Aqoxy1G02545 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 1.2e-58 230.7 240 54.2
FAN19G1502 Fragaria x ananassa HOM05D000572 ORTHO05D002399 1.6e-58 230.3 246 50.8
FvH4_1g10300 Fragaria vesca HOM05D000572 ORTHO05D002399 2.1e-58 229.9 246 50.4
AUR62001561 Chenopodium quinoa HOM05D000572 ORTHO05D002399 2.7e-58 229.6 220 53.2
TPR.G12077 Trifolium pratense HOM05D000572 ORTHO05D002399 6.0e-58 228.4 196 56.6
Os07g0182900 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 1.5e-56 223.8 221 51.1
PGSC0003DMG400030941 Solanum tuberosum HOM05D000572 ORTHO05D002399 1.6e-55 220.3 174 60.3
Medtr3g026210 Medicago truncatula HOM05D000572 ORTHO05D002399 2.1e-55 219.9 207 59.4
Ah.01g020670 Amaranthus hybridus HOM05D000572 ORTHO05D002399 2.4e-54 216.5 253 49.0
RcHm_v2.0_Chr5g0051581 Rosa chinensis HOM05D000572 ORTHO05D002399 5.3e-54 215.3 244 47.5
HPP92_005786 Vanilla planifolia HOM05D000572 ORTHO05D002399 3.8e-52 209.1 246 44.7
CAN.G868.5 Capsicum annuum HOM05D000572 ORTHO05D002399 7.1e-51 204.9 164 59.8
AT4G13610 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 3.5e-50 202.6 245 48.2
Os03g0798300 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 2.3e-49 199.9 238 44.5
GSVIVG01000263001 Vitis vinifera HOM05D000572 ORTHO05D002399 3.9e-49 199.1 241 46.5
SEGI_36703 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 5.6e-48 195.3 221 47.5
Oeu046383.1 Olea europaea HOM05D000572 ORTHO05D002399 2.4e-46 189.9 221 45.7
ATR0584G123 Amborella trichopoda HOM05D000572 ORTHO05D002399 4.0e-46 189.1 251 42.6
SEGI_11646 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 6.9e-46 188.3 241 45.2
Cc02_g23510 Coffea canephora HOM05D000572 ORTHO05D002399 1.2e-45 187.6 225 44.4
SEGI_20274 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 1.3e-44 184.1 221 46.2
GSVIVG01000262001 Vitis vinifera HOM05D000572 ORTHO05D002399 2.9e-44 183.0 255 43.1
Psat3g159120 Pisum sativum HOM05D000572 ORTHO05D002399 9.3e-43 177.9 197 47.2
CDE01G0045 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 6.0e-42 175.3 156 51.9
Ciclev10003166m.g Citrus clementina HOM05D000572 ORTHO05D002399 6.0e-42 175.3 224 43.3
vmacro19834 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 7.9e-42 174.9 180 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2421 Anthoceros agrestis HOM05D000572 ORTHO05D002399 4.0e-38 162.5 249 38.2
QL02p103162 Quercus lobata HOM05D000572 ORTHO05D002399 1.2e-37 161.0 151 51.0
FAN11G2057 Fragaria x ananassa HOM05D000572 ORTHO05D002399 1.5e-37 160.6 225 42.7
Psat3g159080 Pisum sativum HOM05D000572 ORTHO05D002399 3.5e-34 149.4 126 58.7
Ciclev10003543m.g Citrus clementina HOM05D000572 ORTHO05D002399 6.0e-34 148.7 239 38.1
SMO358G0070 Selaginella moellendorffii HOM05D000572 ORTHO05D002399 9.6e-32 141.4 218 38.1
TAR633G0967 Trochodendron aralioides HOM05D000572 ORTHO05D002399 1.1e-30 137.9 106 61.3
Mapoly0038s0027 Marchantia polymorpha HOM05D000572 ORTHO05D002399 5.3e-30 135.6 220 38.6
Actinidia19532 Actinidia chinensis HOM05D000572 ORTHO05D002399 1.3e-28 131.0 152 49.3
Pp3c11_20540 Physcomitrium patens HOM05D000572 ORTHO05D002399 3.2e-27 126.3 246 32.9
FAN21G2448 Fragaria x ananassa HOM05D000572 ORTHO05D002399 3.0e-25 119.8 242 33.9
HPP92_005801 Vanilla planifolia HOM05D000572 ORTHO05D002399 8.2e-23 111.7 151 42.4
ATR0820G285 Amborella trichopoda HOM05D010077 ORTHO05D013698 3.4e-21 106.3 219 33.3
ATR0439G001 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.0e-20 104.8 234 33.3
ATR0820G075 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.0e-20 104.8 230 31.3
ATR0820G299 Amborella trichopoda HOM05D010077 ORTHO05D013698 8.5e-20 101.7 226 31.9
ATR0820G047 Amborella trichopoda HOM05D010077 ORTHO05D013698 5.5e-19 99.0 177 32.8
ATR0820G235 Amborella trichopoda HOM05D010077 ORTHO05D013698 7.2e-19 98.6 245 31.8
ATR0820G152 Amborella trichopoda HOM05D010077 ORTHO05D013698 2.7e-18 96.7 251 30.7
ATR0820G089 Amborella trichopoda HOM05D010077 ORTHO05D013698 3.6e-18 96.3 244 31.6
ATR0820G252 Amborella trichopoda HOM05D010077 ORTHO05D013698 3.6e-18 96.3 170 33.5
CARHR058400 Cardamine hirsuta HOM05D000572 ORTHO05D002399 4.6e-18 95.9 122 51.6
ATR0820G099 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.8e-17 94.0 240 32.1
COL.COLO4_12145 Corchorus olitorius HOM05D000572 ORTHO05D002399 3.7e-15 86.3 121 43.8
VMungo0464G0463 Vigna mungo HOM05D000572 ORTHO05D002399 3.7e-15 86.3 123 44.7
Oeu063107.2 Olea europaea HOM05D000572 ORTHO05D002399 1.1e-11 74.7 67 53.7
ATR0820G260 Amborella trichopoda HOM05D010077 ORTHO05D013698 7.2e-11 72.0 148 29.7
Psat0s3408g0040 Pisum sativum HOM05D000572 ORTHO05D002399 7.2e-11 72.0 131 37.4
AUR62020707 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.8e-09 67.4 239 27.6
Psat4g163840 Pisum sativum HOM05D000572 ORTHO05D002399 2.6e-08 63.5 60 51.7
A04p17510 Brassica napus HOM05D000572 ORTHO05D002399 1.7e-07 60.8 53 62.3
Psat2g046640 Pisum sativum HOM05D000572 ORTHO05D002399 2.2e-07 60.5 60 50.0
Duzib160G0412 Durio zibethinus HOM05D000572 ORTHO05D002399 4.8e-07 59.3 43 62.8
Cre10.g461750 Chlamydomonas reinhardtii HOM05D000572 ORTHO05D002399 7.0e-06 55.5 235 26.8


User provided reference genes

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