Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.4e-69 265.4 132 100.0
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 8.4e-51 203.8 128 77.3
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-48 196.8 146 67.1
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-48 196.8 132 74.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.9e-48 194.9 140 68.6
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.9e-48 194.9 142 68.3
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.8e-46 188.7 145 63.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.8e-46 188.7 138 68.1
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.7e-46 188.3 128 72.7
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 4.8e-46 188.0 145 63.4
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.8e-45 186.0 140 65.7
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.8e-45 186.0 145 63.4
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.8e-45 186.0 142 65.5
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.4e-45 185.7 145 62.8
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-45 185.7 145 62.8
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 8.4e-43 177.2 136 62.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.3e-40 169.1 142 58.5
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 8.7e-40 167.2 139 59.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.1e-39 166.8 136 61.8
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.9e-39 166.0 139 57.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.9e-39 166.0 139 58.3
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 3.3e-39 165.2 137 60.6
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 4.3e-39 164.9 147 57.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.4e-39 164.1 142 57.0
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.6e-38 162.9 139 60.4
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.3e-38 161.0 139 56.1
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 6.3e-38 161.0 139 56.1
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.1e-37 160.2 139 56.8
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 6.9e-37 157.5 128 60.9
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 9.0e-37 157.1 139 54.7
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 7.6e-36 154.1 147 53.7
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.0e-35 153.7 147 54.4
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.7e-35 152.9 148 53.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.9e-35 152.1 149 52.3
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 5.0e-35 151.4 145 53.8
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 6.5e-35 151.0 147 51.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 8.5e-35 150.6 147 53.1
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 8.5e-35 150.6 144 50.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-34 150.2 129 58.1
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.1e-34 150.2 138 57.2
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.4e-34 149.8 138 55.8
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.5e-34 149.1 141 54.6
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 3.2e-34 148.7 148 52.7
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.2e-34 148.3 147 55.1
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 4.2e-34 148.3 138 55.8
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.5e-34 147.9 147 53.7
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.2e-33 146.7 147 51.0
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.2e-33 146.7 147 51.0
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 1.6e-33 146.4 141 51.1
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.1e-33 146.0 141 51.8
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 2.1e-33 146.0 149 50.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 2.1e-33 146.0 147 50.3
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.7e-33 145.6 147 49.7
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 2.7e-33 145.6 148 50.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.7e-33 145.6 139 54.0
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.6e-33 145.2 147 53.7
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 6.1e-33 144.4 151 47.7
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 6.1e-33 144.4 146 50.0
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 7.9e-33 144.1 137 49.6
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.0e-32 143.7 147 51.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.0e-32 143.7 142 54.2
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.3e-32 143.3 147 50.3
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.8e-32 142.9 140 52.9
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.3e-32 142.5 147 52.4
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 3.9e-32 141.7 144 51.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 3.9e-32 141.7 146 47.9
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 3.9e-32 141.7 145 51.0
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 3.9e-32 141.7 147 51.0
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 6.7e-32 141.0 144 52.1
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.5e-31 139.8 140 50.7
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.5e-31 139.8 147 49.7
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.5e-31 139.8 140 51.4
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 2.5e-31 139.0 147 51.7
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 2.5e-31 139.0 149 51.0
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 9.7e-31 137.1 147 49.0
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 9.7e-31 137.1 143 48.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.3e-30 136.7 147 49.7
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.7e-30 136.3 144 52.1
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.7e-30 136.3 140 50.7
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.2e-30 136.0 145 50.3
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 2.8e-30 135.6 147 50.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.8e-30 135.6 133 54.1
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.8e-30 135.6 146 46.6
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.8e-30 135.6 146 46.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.7e-30 135.2 145 49.7
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 6.3e-30 134.4 147 48.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 6.3e-30 134.4 138 49.3
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 6.3e-30 134.4 145 49.0
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.1e-29 133.7 131 50.4
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.4e-29 133.3 145 47.6
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.4e-29 133.3 145 48.3
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.4e-29 133.3 134 50.7
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.4e-29 132.5 149 49.7
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.4e-29 132.5 149 49.7
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 2.4e-29 132.5 147 46.9
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 3.1e-29 132.1 145 49.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.1e-29 132.1 147 46.9
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 3.1e-29 132.1 133 52.6
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.1e-29 131.7 149 50.3
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 5.3e-29 131.3 147 46.9
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 5.3e-29 131.3 145 47.6
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 6.9e-29 131.0 134 52.2
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.1e-29 130.6 149 49.7
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.1e-29 130.6 149 49.7
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.0e-28 129.4 147 46.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 2.0e-28 129.4 129 53.5
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.6e-28 129.0 142 48.6
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.6e-28 129.0 145 47.6
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 3.4e-28 128.6 147 45.6
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 4.5e-28 128.3 146 47.3
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 5.9e-28 127.9 144 50.7
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.2e-27 125.9 143 46.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.2e-27 125.9 145 46.2
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.9e-27 125.6 146 47.3
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.8e-27 125.2 148 43.9
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 2.5e-26 122.5 146 44.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.5e-26 121.3 147 46.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.2e-25 120.2 148 45.9
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.6e-25 118.6 140 45.0
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 7.9e-25 117.5 120 49.2
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 7.9e-25 117.5 150 42.7
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.8e-24 116.3 146 41.8
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.3e-24 115.9 140 44.3
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.1e-23 113.6 123 48.0
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.6e-23 112.5 129 45.7
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.5e-20 103.2 76 67.1
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-20 103.2 76 67.1
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.4e-20 102.1 73 69.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.7e-20 100.9 57 77.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.2e-19 99.4 141 38.3
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.2e-19 99.4 110 47.3
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 5.5e-18 94.7 99 48.5
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 7.2e-18 94.4 112 42.9
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.2e-17 93.6 112 51.8
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.0e-15 86.3 156 34.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 4.4e-15 85.1 147 34.0
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 7.4e-15 84.3 85 47.1
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 6.3e-14 81.3 53 75.5
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.0e-13 77.8 107 43.0
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.5e-12 75.1 129 32.6
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 5.9e-12 74.7 57 64.9
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.6e-09 66.6 125 35.2
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.4e-08 63.5 53 60.4
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 2.3e-08 62.8 45 66.7
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.2e-07 60.5 145 30.3
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 8.2e-06 54.3 129 27.1


User provided reference genes

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