Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 2.0e-33 145.2 74 100.0
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 2.4e-23 111.7 74 77.0
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 1.3e-21 105.9 72 73.6
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 3.0e-21 104.8 72 73.6
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 9.6e-20 99.8 73 68.5
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 2.1e-19 98.6 73 69.9
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 1.8e-18 95.5 74 63.5
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 1.8e-18 95.5 74 63.5
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 4.0e-18 94.4 71 63.4
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 5.3e-18 94.0 71 66.2
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 5.3e-18 94.0 84 63.1
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 6.9e-18 93.6 71 64.8
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.2e-17 92.8 71 62.0
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 1.5e-17 92.4 71 63.4
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 1.5e-17 92.4 74 63.5
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 1.5e-17 92.4 74 63.5
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 2.0e-17 92.0 71 62.0
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 3.4e-17 91.3 74 64.9
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 4.5e-17 90.9 74 59.5
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 5.8e-17 90.5 74 59.5
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 5.8e-17 90.5 74 62.2
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 7.6e-17 90.1 71 62.0
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 7.6e-17 90.1 71 62.0
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 9.9e-17 89.7 71 59.2
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 9.9e-17 89.7 71 63.4
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.3e-16 89.4 71 62.0
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.3e-16 89.4 74 62.2
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.7e-16 89.0 71 63.4
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 1.7e-16 89.0 71 62.0
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 1.7e-16 89.0 74 60.8
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 2.2e-16 88.6 74 63.5
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 2.2e-16 88.6 74 60.8
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 2.2e-16 88.6 74 60.8
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 2.9e-16 88.2 71 59.2
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 2.9e-16 88.2 71 63.4
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 3.8e-16 87.8 71 60.6
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 3.8e-16 87.8 71 62.0
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 3.8e-16 87.8 71 64.8
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 4.9e-16 87.4 71 59.2
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 6.4e-16 87.0 71 62.0
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 6.4e-16 87.0 71 57.7
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 8.4e-16 86.7 71 59.2
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 8.4e-16 86.7 74 56.8
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 8.4e-16 86.7 74 58.1
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 8.4e-16 86.7 71 59.2
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 1.1e-15 86.3 74 54.1
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 1.4e-15 85.9 74 59.5
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 2.4e-15 85.1 74 58.1
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 2.4e-15 85.1 71 54.9
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 2.4e-15 85.1 74 60.8
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 2.4e-15 85.1 71 59.2
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 3.2e-15 84.7 71 56.3
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 3.2e-15 84.7 71 54.9
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 3.2e-15 84.7 69 55.1
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 4.2e-15 84.3 71 57.7
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 4.2e-15 84.3 71 62.0
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 5.4e-15 84.0 71 54.9
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.4e-15 84.0 71 59.2
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.4e-15 84.0 71 59.2
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 5.4e-15 84.0 71 59.2
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 5.4e-15 84.0 71 57.7
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 7.1e-15 83.6 74 59.5
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 9.3e-15 83.2 71 53.5
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.2e-14 82.8 71 56.3
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 1.2e-14 82.8 71 54.9
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 1.6e-14 82.4 74 56.8
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 1.6e-14 82.4 74 52.7
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 2.1e-14 82.0 71 56.3
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 2.7e-14 81.6 74 52.7
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.5e-14 81.3 74 60.8
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.5e-14 81.3 74 60.8
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 7.9e-14 80.1 74 55.4
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 7.9e-14 80.1 74 55.4
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 7.9e-14 80.1 74 55.4
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 1.3e-13 79.3 74 55.4
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 1.8e-13 79.0 74 54.1
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 1.8e-13 79.0 74 54.1
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 2.3e-13 78.6 71 54.9
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 2.3e-13 78.6 74 54.1
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 3.0e-13 78.2 71 54.9
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 3.9e-13 77.8 71 54.9
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 8.7e-13 76.6 74 54.1
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 3.3e-12 74.7 66 56.1
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 4.3e-12 74.3 71 47.9
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 7.4e-12 73.6 74 50.0
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 1.3e-11 72.8 72 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 1.6e-11 72.4 71 43.7
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 1.6e-11 72.4 66 57.6
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 2.1e-11 72.0 63 57.1
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 2.8e-11 71.6 74 51.4
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 4.8e-11 70.9 71 42.3
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 6.2e-11 70.5 59 61.0
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 6.2e-11 70.5 67 53.7
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.1e-10 69.7 59 57.6
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 1.4e-10 69.3 62 53.2
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 1.4e-10 69.3 62 53.2
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 2.4e-10 68.6 72 47.2
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 2.4e-10 68.6 72 47.2
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 3.1e-10 68.2 62 54.8
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.2e-09 66.2 67 50.7
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 1.2e-09 66.2 61 49.2
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 1.5e-09 65.9 59 49.2
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 2.6e-09 65.1 59 52.5
C09p35140 Brassica napus HOM05D007086 ORTHO05D008927 4.5e-09 64.3 71 50.7
BolC9t56360H Brassica oleracea HOM05D007086 ORTHO05D008927 4.5e-09 64.3 71 50.7
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 4.5e-09 64.3 59 57.6
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 1.0e-08 63.2 59 52.5
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 1.3e-08 62.8 46 69.6
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 2.9e-08 61.6 66 50.0
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 6.5e-08 60.5 70 40.0
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 8.4e-08 60.1 71 46.5
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.9e-07 58.9 62 50.0
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 2.5e-07 58.5 67 49.3
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 4.2e-07 57.8 66 45.5
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 9.3e-07 56.6 54 50.0


User provided reference genes

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