Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR048610 Cardamine hirsuta HOM05D000228 ORTHO05D013010 5.9e-73 277.3 131 100.0
AT1G63020 Arabidopsis thaliana HOM05D000228 ORTHO05D006129 4.9e-51 204.5 122 76.2
AL2G12580 Arabidopsis lyrata HOM05D000228 ORTHO05D006129 6.4e-51 204.1 122 77.0
BcaC02g10404 Brassica carinata HOM05D000228 ORTHO05D006129 3.5e-49 198.4 122 76.2
BolC4t24462H Brassica oleracea HOM05D000228 ORTHO05D006129 3.5e-49 198.4 122 76.2
BcaC06g31930 Brassica carinata HOM05D000228 ORTHO05D006129 4.6e-49 198.0 122 75.4
C04p29320 Brassica napus HOM05D000228 ORTHO05D006129 7.8e-49 197.2 122 76.2
A03p68370 Brassica napus HOM05D000228 ORTHO05D006129 5.1e-48 194.5 122 74.6
BraA01t02634Z Brassica rapa HOM05D000228 ORTHO05D006129 5.1e-48 194.5 122 74.6
Carub.0002s0198 Capsella rubella HOM05D000228 ORTHO05D006129 6.6e-48 194.1 122 72.1
Sp2g01560 Schrenkiella parvula HOM05D000228 ORTHO05D006129 7.3e-47 190.7 122 73.0
Aa31LG2G520 Aethionema arabicum HOM05D000228 ORTHO05D006129 2.0e-44 182.6 126 66.7
BraA09t36984Z Brassica rapa HOM05D000228 ORTHO05D006129 8.4e-43 177.2 124 66.9
A09p13380 Brassica napus HOM05D000228 ORTHO05D006129 1.9e-42 176.0 124 66.1
C09p15860 Brassica napus HOM05D000228 ORTHO05D006129 2.4e-42 175.6 126 65.1
Thhalv10023214m.g Eutrema salsugineum HOM05D000228 ORTHO05D006129 7.1e-42 174.1 123 69.1
BcaC04g22731 Brassica carinata HOM05D000228 ORTHO05D006129 2.1e-41 172.6 126 64.3
BolC9t54499H Brassica oleracea HOM05D000228 ORTHO05D006129 4.6e-41 171.4 126 63.5
THA.LOC104809424 Tarenaya hassleriana HOM05D000228 ORTHO05D006129 1.1e-31 140.2 129 51.9
CsaV3_3G003630 Cucumis sativus L. HOM05D000228 ORTHO05D006129 6.9e-29 131.0 126 46.0
MELO3C014034.2 Cucumis melo HOM05D000228 ORTHO05D006129 1.5e-28 129.8 126 46.0
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 1.5e-28 129.8 125 48.0
QL12p017019 Quercus lobata HOM05D000228 ORTHO05D006129 1.5e-28 129.8 132 45.5
Dinv37697 Davidia involucrata HOM05D000228 ORTHO05D006129 2.6e-28 129.0 125 48.0
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 3.4e-28 128.6 126 46.0
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 3.4e-28 128.6 126 46.0
GSVIVG01019869001 Vitis vinifera HOM05D000228 ORTHO05D006129 3.4e-28 128.6 129 45.0
Cfa012094 Carpinus fangiana HOM05D000228 ORTHO05D006129 5.8e-28 127.9 129 43.4
Thecc.03G270300 Theobroma cacao HOM05D000228 ORTHO05D006129 7.6e-28 127.5 134 44.0
Manes.02G028200 Manihot esculenta HOM05D000228 ORTHO05D006129 1.3e-27 126.7 122 44.3
PGR031G2544 Punica granatum HOM05D000228 ORTHO05D006129 1.3e-27 126.7 127 47.2
CSS0022136 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D006129 2.9e-27 125.6 122 45.1
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 2.9e-27 125.6 126 45.2
Nitab4.5_0001714g0190 Nicotiana tabacum HOM05D000228 ORTHO05D006129 3.8e-27 125.2 132 47.7
Nitab4.5_0007891g0030 Nicotiana tabacum HOM05D000228 ORTHO05D006129 4.9e-27 124.8 130 46.2
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 1.1e-26 123.6 126 45.2
Hund11530 Selenicereus undatus HOM05D000228 ORTHO05D006129 1.1e-26 123.6 126 43.7
Oeu062351.1 Olea europaea HOM05D000228 ORTHO05D006129 1.4e-26 123.2 131 47.3
CiPaw.12G099100 Carya illinoinensis HOM05D000228 ORTHO05D013010 1.9e-26 122.9 107 49.5
HanXRQChr06g0165071 Helianthus annuus HOM05D000228 ORTHO05D006129 1.9e-26 122.9 125 45.6
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 1.9e-26 122.9 118 46.6
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 3.2e-26 122.1 126 45.2
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 5.5e-26 121.3 128 45.3
Dinv39017 Davidia involucrata HOM05D000228 ORTHO05D006129 7.1e-26 120.9 120 47.5
CAN.G981.44 Capsicum annuum HOM05D000228 ORTHO05D006129 9.3e-26 120.6 122 46.7
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 9.3e-26 120.6 130 44.6
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 1.6e-25 119.8 116 45.7
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 1.6e-25 119.8 128 46.9
AUR62010662 Chenopodium quinoa HOM05D000228 ORTHO05D006129 2.7e-25 119.0 135 42.2
ECA246G3981 Erigeron canadensis HOM05D000228 ORTHO05D006129 2.7e-25 119.0 122 45.9
Atru.chr9.1533 Acer truncatum HOM05D000228 ORTHO05D006129 4.6e-25 118.2 125 44.0
Lj2C197T6 Lonicera japonica HOM05D000228 ORTHO05D006129 4.6e-25 118.2 120 46.7
QL05p069269 Quercus lobata HOM05D000228 ORTHO05D006129 6.0e-25 117.9 131 45.0
Ah.12g057750 Amaranthus hybridus HOM05D000228 ORTHO05D006129 7.9e-25 117.5 131 39.7
COL.COLO4_05280 Corchorus olitorius HOM05D000228 ORTHO05D006129 1.0e-24 117.1 132 43.2
MSTRG.25571 Avicennia marina HOM05D000228 ORTHO05D006129 1.3e-24 116.7 134 44.8
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 1.3e-24 116.7 134 44.0
AUR62017301 Chenopodium quinoa HOM05D000228 ORTHO05D006129 2.3e-24 115.9 135 40.0
FAN04G1469 Fragaria x ananassa HOM05D000228 ORTHO05D006129 2.3e-24 115.9 116 44.8
Haze_08958 Corylus avellana HOM05D000228 ORTHO05D006129 5.1e-24 114.8 107 47.7
Hma1.2p1_0138F.1_g062630 Hydrangea macrophylla HOM05D000228 ORTHO05D006129 5.1e-24 114.8 127 43.3
Migut.A00916 Erythranthe guttata HOM05D000228 ORTHO05D006129 1.5e-23 113.2 134 44.0
FvH4_5g01400 Fragaria vesca HOM05D000228 ORTHO05D006129 1.5e-23 113.2 116 44.8
FAN18G2520 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.5e-23 113.2 116 44.8
Cc08_g13910 Coffea canephora HOM05D000228 ORTHO05D006129 1.9e-23 112.8 132 42.4
Gohir.D08G196600 Gossypium hirsutum HOM05D000228 ORTHO05D006129 1.9e-23 112.8 128 39.8
Gorai.004G207300 Gossypium raimondii HOM05D000228 ORTHO05D006129 1.9e-23 112.8 128 39.8
Lj2g0010994 Lotus japonicus HOM05D000228 ORTHO05D006129 2.5e-23 112.5 126 41.3
Lalb_Chr05g0225101 Lupinus albus HOM05D000228 ORTHO05D013010 3.3e-23 112.1 132 40.2
Prupe.5G089300 Prunus persica HOM05D000228 ORTHO05D006129 3.3e-23 112.1 127 42.5
Gohir.A08G178200 Gossypium hirsutum HOM05D000228 ORTHO05D006129 4.3e-23 111.7 119 41.2
Medtr5g011000 Medicago truncatula HOM05D000228 ORTHO05D006129 5.6e-23 111.3 128 42.2
Psat2g181400 Pisum sativum HOM05D000228 ORTHO05D006129 5.6e-23 111.3 128 43.0
CAN.G981.46 Capsicum annuum HOM05D000228 ORTHO05D006129 7.4e-23 110.9 116 46.6
FAN13G2476 Fragaria x ananassa HOM05D000228 ORTHO05D006129 7.4e-23 110.9 116 44.0
Lj8C239G8 Lonicera japonica HOM05D000228 ORTHO05D006129 7.4e-23 110.9 126 42.1
RcHm_v2.0_Chr7g0199481 Rosa chinensis HOM05D000228 ORTHO05D006129 7.4e-23 110.9 123 43.9
Glyma.11G026700 Glycine max HOM05D000228 ORTHO05D006129 9.6e-23 110.5 126 42.1
SHI01912 Sapria himalayana HOM05D000228 ORTHO05D006129 2.1e-22 109.4 106 43.4
unitig_22.g5477 Utricularia gibba HOM05D000228 ORTHO05D006129 2.1e-22 109.4 109 45.9
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 2.8e-22 109.0 105 43.8
TPR.G6660 Trifolium pratense HOM05D000228 ORTHO05D006129 2.8e-22 109.0 122 41.0
FAN08G3600 Fragaria x ananassa HOM05D000228 ORTHO05D006129 3.7e-22 108.6 99 45.5
arahy.Tifrunner.gnm1.ann1.RU3ERW Arachis hypogaea HOM05D000228 ORTHO05D006129 4.8e-22 108.2 127 42.5
TAR636G2974 Trochodendron aralioides HOM05D000228 ORTHO05D006129 6.2e-22 107.8 133 39.1
Phvul.002G153700 Phaseolus vulgaris HOM05D000228 ORTHO05D006129 1.8e-21 106.3 124 40.3
DCAR_008426 Daucus carota HOM05D000228 ORTHO05D006129 2.4e-21 105.9 132 41.7
Glyma.01G215700 Glycine max HOM05D000228 ORTHO05D006129 3.1e-21 105.5 128 40.6
Nn6g34281 Nelumbo nucifera HOM05D000228 ORTHO05D006129 3.1e-21 105.5 132 39.4
PSO782G2782 Papaver somniferum HOM05D000228 ORTHO05D006129 3.1e-21 105.5 135 38.5
VMungo1215G3193 Vigna mungo HOM05D000228 ORTHO05D006129 3.1e-21 105.5 124 40.3
Lalb_Chr09g0324731 Lupinus albus HOM05D000228 ORTHO05D006129 5.3e-21 104.8 130 42.3
PSO478G3868 Papaver somniferum HOM05D000228 ORTHO05D006129 5.3e-21 104.8 135 39.3
CANSAT21G2272 Cannabis sativa HOM05D000228 ORTHO05D006129 1.2e-20 103.6 136 38.2
Gohir.A11G021201 Gossypium hirsutum HOM05D000228 ORTHO05D013010 1.2e-20 103.6 100 47.0
ATR0757G037 Amborella trichopoda HOM05D000228 ORTHO05D006129 2.0e-20 102.8 120 38.3
Aqoxy1G00844 Aquilegia oxysepala HOM05D000228 ORTHO05D006129 7.6e-20 100.9 119 37.8
MBI12_g02094_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D006129 1.3e-19 100.1 133 38.3
Lalb_Chr05g0214761 Lupinus albus HOM05D000228 ORTHO05D006129 1.9e-18 96.3 128 38.3
arahy.Tifrunner.gnm1.ann1.WX3P41 Arachis hypogaea HOM05D000228 ORTHO05D006129 2.5e-18 95.9 99 46.5
DCAR_006765 Daucus carota HOM05D000228 ORTHO05D006129 4.2e-18 95.1 136 38.2
SGA_v2.0_scaffold146G36222 Striga asiatica HOM05D000228 ORTHO05D006129 4.2e-18 95.1 128 40.6
MD04G1068800 Malus domestica HOM05D000228 ORTHO05D006129 5.5e-18 94.7 105 41.9
TPR.G33168 Trifolium pratense HOM05D000228 ORTHO05D013010 7.1e-18 94.4 108 40.7
Os04g0572600 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 6.0e-17 91.3 127 37.0
Os09g0555200 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 7.9e-17 90.9 127 36.2
HPP92_014991 Vanilla planifolia HOM05D000228 ORTHO05D013010 4.1e-13 78.6 77 41.6
arahy.Tifrunner.gnm1.ann1.RLQ4ZH Arachis hypogaea HOM05D000228 ORTHO05D013010 2.6e-12 75.9 60 55.0
Zm00001eb035080 Zea mays HOM05D000228 ORTHO05D006129 2.6e-12 75.9 104 34.6
arahy.Tifrunner.gnm1.ann1.08AYB8 Arachis hypogaea HOM05D000228 ORTHO05D013010 1.3e-11 73.6 94 38.3
Zm00001eb207920 Zea mays HOM05D000228 ORTHO05D004880 2.9e-11 72.4 132 32.6
PSO063G0693 Papaver somniferum HOM05D000228 ORTHO05D004880 3.8e-11 72.0 126 31.0
PSO782G2240 Papaver somniferum HOM05D000228 ORTHO05D004880 6.5e-11 71.2 127 30.7
EL10Ac5g12720 Beta vulgaris HOM05D000228 ORTHO05D006129 1.4e-10 70.1 66 47.0
SEGI_28238 Sequoiadendron giganteum HOM05D000228 ORTHO05D013010 1.9e-10 69.7 74 39.2
Os02g0152800 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D004880 2.5e-10 69.3 127 30.7
Aqoxy7G04198 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 7.2e-10 67.8 124 29.0
Aqoxy6G01013 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 6.1e-09 64.7 112 28.6
HanXRQChr01g0022531 Helianthus annuus HOM05D000228 ORTHO05D004880 6.1e-09 64.7 109 30.3
Mapoly0006s0043 Marchantia polymorpha HOM05D000228 ORTHO05D006129 7.9e-09 64.3 88 34.1
AagrBONN_evm.TU.Sc2ySwM_344.2431 Anthoceros agrestis HOM05D000228 ORTHO05D006129 2.3e-08 62.8 100 29.0
arahy.Tifrunner.gnm1.ann1.K566NY Arachis hypogaea HOM05D000228 ORTHO05D004880 2.3e-08 62.8 108 29.6
HPP92_010995 Vanilla planifolia HOM05D000228 ORTHO05D004880 2.3e-08 62.8 127 27.6
arahy.Tifrunner.gnm1.ann1.K7S8RA Arachis hypogaea HOM05D000228 ORTHO05D013010 3.9e-08 62.0 60 48.3
CAN.G1045.38 Capsicum annuum HOM05D000228 ORTHO05D004880 3.9e-08 62.0 127 26.8
Glyma.13G196900 Glycine max HOM05D000228 ORTHO05D004880 3.9e-08 62.0 130 24.6
arahy.Tifrunner.gnm1.ann1.YWW8G9 Arachis hypogaea HOM05D000228 ORTHO05D013010 8.7e-08 60.8 103 31.1
HanXRQChr15g0481481 Helianthus annuus HOM05D000228 ORTHO05D004880 8.7e-08 60.8 108 28.7
MBI13_g09079_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 8.7e-08 60.8 95 30.5
CANSAT56G3974 Cannabis sativa HOM05D000228 ORTHO05D004880 1.1e-07 60.5 120 26.7
Nn6g31494 Nelumbo nucifera HOM05D000228 ORTHO05D004880 1.1e-07 60.5 99 30.3
Medtr8g038990 Medicago truncatula HOM05D000228 ORTHO05D004880 1.5e-07 60.1 130 25.4
TAR626G0107 Trochodendron aralioides HOM05D000228 ORTHO05D004880 1.5e-07 60.1 97 30.9
Lalb_Chr03g0032731 Lupinus albus HOM05D000228 ORTHO05D004880 1.9e-07 59.7 118 25.4
Eucgr.J01182 Eucalyptus grandis HOM05D000228 ORTHO05D004880 2.5e-07 59.3 106 27.4
Solyc01g096390.4 Solanum lycopersicum HOM05D000228 ORTHO05D004880 2.5e-07 59.3 129 25.6
Sopen01g040120 Solanum pennellii HOM05D000228 ORTHO05D004880 2.5e-07 59.3 129 25.6
Prupe.2G035500 Prunus persica HOM05D000228 ORTHO05D004880 3.3e-07 58.9 108 25.0
TWI15G0020 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 3.3e-07 58.9 109 25.7
EL10Ac5g12721 Beta vulgaris HOM05D000228 ORTHO05D013010 4.3e-07 58.5 69 39.1
RcHm_v2.0_Chr1g0324091 Rosa chinensis HOM05D000228 ORTHO05D004880 4.3e-07 58.5 108 27.8
Sabra03G0146600 Salix brachista HOM05D000228 ORTHO05D004880 4.3e-07 58.5 83 31.3
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 5.7e-07 58.2 120 27.5
Nitab4.5_0004955g0050 Nicotiana tabacum HOM05D000228 ORTHO05D004880 5.7e-07 58.2 127 25.2
TPR.G25062 Trifolium pratense HOM05D000228 ORTHO05D004880 5.7e-07 58.2 105 27.6
ECA236G0597 Erigeron canadensis HOM05D000228 ORTHO05D004880 7.4e-07 57.8 99 29.3
Lj3g0014961 Lotus japonicus HOM05D000228 ORTHO05D004880 7.4e-07 57.8 130 24.6
Lalb_Chr01g0007761 Lupinus albus HOM05D000228 ORTHO05D004880 7.4e-07 57.8 98 27.6
TPR.G27818 Trifolium pratense HOM05D000228 ORTHO05D004880 7.4e-07 57.8 95 28.4
Glyma.15G235900 Glycine max HOM05D000228 ORTHO05D004880 9.7e-07 57.4 118 23.7
Atru.chr12.1341 Acer truncatum HOM05D000228 ORTHO05D004880 1.6e-06 56.6 100 26.0
Thhalv10016128m.g Eutrema salsugineum HOM05D000228 ORTHO05D004880 1.6e-06 56.6 105 26.7
Sc11g0006440 Simmondsia chinensis HOM05D000228 ORTHO05D004880 1.6e-06 56.6 98 29.6
Ah.10g030570 Amaranthus hybridus HOM05D000228 ORTHO05D004880 2.2e-06 56.2 112 26.8
Ca_23956_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 2.2e-06 56.2 105 27.6
Ca_30886_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 2.2e-06 56.2 105 27.6
Lj3g0006268 Lotus japonicus HOM05D000228 ORTHO05D004880 2.2e-06 56.2 98 25.5
MD02G1287600 Malus domestica HOM05D000228 ORTHO05D004880 2.8e-06 55.8 108 24.1
MD07G1039700 Malus domestica HOM05D000228 ORTHO05D004880 2.8e-06 55.8 108 24.1
Manes.04G159600 Manihot esculenta HOM05D000228 ORTHO05D004880 2.8e-06 55.8 122 26.2
Phvul.011G206900 Phaseolus vulgaris HOM05D000228 ORTHO05D004880 2.8e-06 55.8 101 24.8
CiPaw.13G013500 Carya illinoinensis HOM05D000228 ORTHO05D004880 3.7e-06 55.5 108 25.0
Sed0005526 Sechium edule HOM05D000228 ORTHO05D004880 3.7e-06 55.5 108 26.9
VMungo1127G1028 Vigna mungo HOM05D000228 ORTHO05D004880 3.7e-06 55.5 97 25.8
CSS0032728 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D004880 4.8e-06 55.1 94 27.7
GSVIVG01013491001 Vitis vinifera HOM05D000228 ORTHO05D004880 4.8e-06 55.1 109 29.4
Peaxi162Scf00767g00417 Petunia axillaris HOM05D000228 ORTHO05D004880 6.3e-06 54.7 107 25.2
SEGI_25004 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 6.3e-06 54.7 65 40.0
AT2G40030 Arabidopsis thaliana HOM05D000228 ORTHO05D004880 8.2e-06 54.3 94 26.6
arahy.Tifrunner.gnm1.ann1.D50IR8 Arachis hypogaea HOM05D000228 ORTHO05D013010 8.2e-06 54.3 66 43.9


User provided reference genes

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