Gene: Lsat_1_v5_gn_7_31901
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_7_31901
- Transcript Identifier Lsat_1_v5_gn_7_31901.1
- Gene Type Coding gene
- Location Lsat_1_v8_lg_7 : 41273602-41287743 : positive
Gene Family Information
- ID HOM05D006097
- #Genes/#Species 130/94
- Phylogenetic origin
- ID ORTHO05D004880
- #Genes/#Species 169/88
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lsat_1_v5_gn_7_31901.v5
- pacid 38915002
Descriptions
- Description K16251 - DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] (NRPE1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT3G55850 |
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT2G40030 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT2G40030 |
| GO:0010218 | ISO | PLAZA Integrative Orthology | response to far red light | AT3G55850 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT2G40030 |
| GO:0009704 | ISO | PLAZA Integrative Orthology | de-etiolation | AT3G55850 |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT2G40030 |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G40030 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016810 | IEA | InterPro | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030880 | ISO | PLAZA Integrative Orthology | RNA polymerase complex | AT2G40030 |
| GO:0048471 | ISO | PLAZA Integrative Orthology | perinuclear region of cytoplasm | AT3G55850 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G40030 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT2G40030 |
| GO:0005783 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum | AT3G55850 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT2G40030 |
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT2G40030 |
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT2G40030 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR013108 | Amidohydrolase 3 |
| IPR006592 | RNA polymerase, N-terminal |
| IPR011059 | Metal-dependent hydrolase, composite domain superfamily |
| IPR032466 | Metal-dependent hydrolase |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR033932 | YtcJ like |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| Mapman id | Description |
|---|---|
| 15.1.5.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic components.subunit 1 |