Gene: Nitab4.5_0004955g0050

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0004955g0050
  • Transcript Identifier Nitab4.5_0004955g0050.1
  • Gene Type Coding gene
  • Location Nitab4.5_0004955 : 160592-178695 : positive

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0004955g0050.1
  • SR1-identifier Nta01g10500.1

Descriptions

  • Description RNA polymerase Rpb1, domain 5, Protein of unknown function DUF3223, Copper amine oxidase, N2/N3-terminal, RNA polymerase, N-terminal, RNA polymerase Rpb1, domain 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT2G40030
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT2G40030
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT2G40030
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT2G40030

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G40030

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G40030
GO:0016604
ISO
PLAZA Integrative Orthologynuclear body AT2G40030
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT2G40030
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT2G40030
GO:0030880
ISO
PLAZA Integrative OrthologyRNA polymerase complex AT2G40030
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G40030

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006592 RNA polymerase, N-terminal
IPR007080 RNA polymerase Rpb1, domain 1
IPR044893 RNA polymerase Rpb1, clamp domain superfamily
Mapman id Description
35.1 not assigned.annotated