Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR038410 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.8e-251 872.1 423 100.0
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 3.7e-201 704.9 427 83.8
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 1.3e-198 696.4 427 82.4
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 2.3e-198 695.7 427 82.4
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 2.8e-196 688.7 427 80.8
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 3.6e-196 688.3 426 80.8
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 6.2e-196 687.6 427 80.6
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 1.1e-195 686.8 427 80.8
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 1.8e-195 686.0 427 81.0
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 7.5e-194 680.6 427 79.4
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 9.8e-194 680.2 427 79.4
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.3e-193 679.9 427 80.1
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 1.7e-193 679.5 427 80.1
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 4.9e-193 677.9 427 79.9
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 3.9e-190 668.3 427 78.2
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 1.7e-185 652.9 427 76.1
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 7.1e-184 647.5 427 75.6
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 7.8e-183 644.0 427 74.9
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 2.3e-182 642.5 427 74.9
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 5.1e-182 641.3 427 74.7
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.5e-181 639.8 427 75.2
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 1.2e-180 636.7 427 73.8
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 3.6e-180 635.2 426 73.5
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 3.1e-179 632.1 427 73.3
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 4.0e-179 631.7 427 73.5
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 4.0e-179 631.7 427 73.3
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 5.2e-179 631.3 427 73.5
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.0e-178 629.4 426 73.0
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 2.0e-178 629.4 427 72.8
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 7.6e-178 627.5 427 73.8
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 1.3e-177 626.7 427 73.3
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 2.2e-177 625.9 427 73.8
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 3.8e-177 625.2 427 73.1
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 3.8e-177 625.2 427 72.1
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 3.8e-177 625.2 427 73.3
Cpa.g.sc32.133 Carica papaya HOM05D003289 ORTHO05D004594 6.4e-177 624.4 426 73.0
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 1.9e-176 622.9 427 72.8
Ah.08g215950 Amaranthus hybridus HOM05D003289 ORTHO05D004594 4.1e-176 621.7 427 72.8
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 7.1e-176 620.9 416 73.3
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 7.1e-176 620.9 427 71.9
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 9.2e-176 620.5 427 72.4
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 1.6e-175 619.8 426 72.5
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 1.6e-175 619.8 427 72.4
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 2.1e-175 619.4 436 71.1
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 2.1e-175 619.4 427 72.6
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 2.7e-175 619.0 427 72.6
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 4.6e-175 618.2 427 72.1
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 4.6e-175 618.2 427 72.1
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 6.0e-175 617.8 427 71.9
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 7.8e-175 617.5 427 72.1
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 1.0e-174 617.1 427 71.7
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 1.3e-174 616.7 427 72.1
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 1.3e-174 616.7 427 71.9
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 1.3e-174 616.7 436 70.9
Os02g0511900 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 1.7e-174 616.3 427 71.2
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 2.3e-174 615.9 427 71.2
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 2.3e-174 615.9 427 71.9
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 3.0e-174 615.5 427 71.9
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 3.0e-174 615.5 427 71.2
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 3.9e-174 615.1 458 69.2
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 5.1e-174 614.8 427 71.4
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 5.1e-174 614.8 428 71.0
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 5.1e-174 614.8 427 72.1
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 8.7e-174 614.0 426 71.1
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.1e-173 613.6 427 71.0
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 1.1e-173 613.6 428 71.3
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 1.1e-173 613.6 427 72.1
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.5e-173 613.2 427 71.7
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 3.3e-173 612.1 427 71.2
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 1.2e-172 610.1 427 71.0
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 1.2e-172 610.1 427 70.3
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 2.8e-172 609.0 427 71.2
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 2.8e-172 609.0 424 70.5
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 1.1e-171 607.1 427 71.9
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 1.1e-171 607.1 427 70.7
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 1.4e-171 606.7 427 70.7
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 2.4e-171 605.9 427 70.0
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 3.1e-171 605.5 428 69.9
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 1.2e-170 603.6 429 70.2
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 9.9e-170 600.5 450 68.0
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 1.3e-169 600.1 427 68.9
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 2.9e-169 599.0 427 70.0
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 2.9e-169 599.0 427 68.9
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 4.9e-169 598.2 427 68.9
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 2.1e-167 592.8 427 69.8
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 1.0e-166 590.5 458 65.9
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 8.1e-164 580.9 385 74.0
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 3.4e-162 575.5 489 62.4
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 3.8e-161 572.0 427 68.9
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 5.4e-160 568.2 436 67.9
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 8.1e-156 554.3 425 64.0
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 1.1e-155 553.9 449 63.3
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 1.5e-154 550.1 430 63.7
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 3.4e-154 548.9 428 62.6
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 2.9e-153 545.8 428 63.3
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 1.1e-152 543.9 400 68.0
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 3.2e-152 542.3 429 64.8
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 5.5e-152 541.6 396 69.2
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 1.3e-150 537.0 427 65.1
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 3.9e-150 535.4 427 64.4
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 9.3e-144 514.2 426 63.6
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 1.4e-139 500.4 399 65.2
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 1.4e-131 473.8 448 53.6
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 1.0e-121 441.0 388 57.2
Nitab4.5_0003532g0040 Nicotiana tabacum HOM05D003289 ORTHO05D004594 4.4e-117 425.6 331 66.2
Solyc11g067110.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 5.7e-117 425.2 316 67.1
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.3e-116 424.1 283 71.4
Nitab4.5_0004240g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 2.2e-116 423.3 331 65.9
Peaxi162Scf00544g00922 Petunia axillaris HOM05D003289 ORTHO05D004594 3.7e-116 422.5 315 67.0
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 2.0e-114 416.8 330 63.6
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 3.5e-114 416.0 429 50.6
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 4.0e-110 402.5 287 69.0
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 1.2e-106 391.0 439 48.5
HanXRQChr09g0249461 Helianthus annuus HOM05D003289 ORTHO05D004594 1.3e-97 360.9 267 66.7
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 3.3e-96 356.3 244 71.7
Zm00001eb179700 Zea mays HOM05D003289 ORTHO05D004594 8.6e-89 331.6 230 69.6
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 6.4e-84 315.5 178 84.3
TPR.G328 Trifolium pratense HOM05D003289 ORTHO05D004594 9.2e-59 231.9 142 81.0
MBI15_g40424_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 6.4e-52 209.1 172 58.7
QL02p053680 Quercus lobata HOM05D003289 ORTHO05D004594 4.2e-51 206.5 144 73.6
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 2.3e-49 200.7 162 66.7
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 3.9e-49 199.9 162 66.7
Aqoxy16s008 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 1.3e-47 194.9 144 70.8
Nitab4.5_0003532g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.3e-47 194.9 113 85.0
QL07p004315 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-47 194.5 162 65.4
Nitab4.5_0004240g0010 Nicotiana tabacum HOM05D003289 ORTHO05D004594 4.8e-47 193.0 112 84.8
Peaxi162Scf00544g00915 Petunia axillaris HOM05D003289 ORTHO05D004594 1.1e-46 191.8 112 83.9
Aa31LG1G190 Aethionema arabicum HOM05D003289 ORTHO05D026451 1.7e-44 184.5 302 44.4
QL09p040364 Quercus lobata HOM05D000370 ORTHO05D001335 2.9e-36 157.1 162 58.0
Zm00001eb135070 Zea mays HOM05D003289 ORTHO05D034141 3.2e-35 153.7 182 48.9
MBI15_g40425_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 1.4e-30 138.3 144 56.9
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-30 136.7 74 77.0
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 2.0e-29 134.4 74 75.7
BolC5t29400H Brassica oleracea HOM05D003289 ORTHO05D004594 7.9e-26 122.5 138 52.2
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 4.5e-21 106.7 63 81.0
Zm00001eb147670 Zea mays HOM05D003289 ORTHO05D034141 2.6e-13 80.9 41 80.5
Cfa019187 Carpinus fangiana HOM05D003289 ORTHO05D034141 2.2e-12 77.8 41 75.6
Aa31LG1G200 Aethionema arabicum HOM05D003289 ORTHO05D004594 7.0e-06 56.2 40 75.0


User provided reference genes

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