Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 2003.0 1017 100.0
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1293.5 1009 69.3
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1268.1 1024 67.0
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1262.3 1065 64.7
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1261.5 993 67.3
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1226.1 1065 63.8
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1224.2 1064 63.9
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1221.1 1064 63.9
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1221.1 1064 63.9
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1206.4 1064 63.1
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1181.4 985 65.3
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1176.8 988 64.8
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1170.2 1024 62.9
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1159.4 956 65.2
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1159.1 962 65.0
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1154.8 959 64.9
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1154.4 979 65.3
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1146.0 1023 61.5
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1144.0 1000 62.8
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1143.6 1018 62.3
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1143.3 1001 62.8
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1142.5 1028 61.3
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1136.3 1019 61.3
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1135.2 1002 62.4
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1130.5 1013 61.4
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1128.6 1043 59.8
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1126.3 1000 61.8
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1124.8 1024 62.0
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1117.1 1018 61.8
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1115.9 986 62.3
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1114.8 1018 60.5
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1109.0 1003 61.4
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 1107.8 1000 61.8
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1103.6 970 62.0
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1080.9 1006 60.1
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 1.0e-310 1070.1 998 58.8
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 3.1e-310 1068.5 915 64.5
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 2.0e-309 1065.8 1045 57.2
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 9.9e-309 1063.5 989 59.2
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 6.4e-308 1060.8 1014 58.7
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 2.7e-306 1055.4 1009 59.0
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 5.1e-305 1051.2 1023 58.3
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 5.6e-304 1047.7 1009 58.8
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 5.6e-304 1047.7 1015 58.6
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 2.1e-303 1045.8 1010 58.4
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 5.3e-302 1041.2 1005 58.5
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 1.2e-301 1040.0 1008 58.1
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 1.5e-301 1039.6 1017 58.2
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 9.9e-301 1036.9 1012 57.5
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 1.3e-300 1036.6 1008 57.9
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 2.9e-300 1035.4 1018 58.3
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 6.4e-300 1034.2 966 59.3
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 7.9e-298 1027.3 1025 56.7
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 1.0e-297 1026.9 1019 57.8
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.8e-297 1026.2 1028 57.7
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 6.2e-295 1017.7 912 61.8
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 6.9e-294 1014.2 957 59.2
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 4.9e-292 1008.1 912 62.2
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 2.5e-288 995.7 960 59.7
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 1.5e-285 986.5 998 57.4
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 6.7e-281 971.1 863 63.3
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 2.0e-280 969.5 787 67.6
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 3.4e-277 958.7 1070 52.7
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 4.1e-270 935.3 1043 52.8
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 2.9e-268 929.1 1021 54.8
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 7.7e-261 904.4 994 54.5
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.2e-258 897.1 824 61.9
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 6.3e-255 884.8 998 52.8
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 1.8e-254 883.2 733 67.3
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 4.1e-254 882.1 1002 51.8
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 2.7e-253 879.4 931 55.2
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 2.7e-253 879.4 864 58.9
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 1.0e-252 877.5 1034 49.9
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.6e-250 870.2 971 54.2
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 6.1e-250 868.2 958 53.0
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.8e-249 866.7 818 61.1
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 2.3e-249 866.3 802 60.1
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 5.2e-249 865.1 780 63.5
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 1.0e-244 850.9 763 62.8
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 6.6e-244 848.2 896 55.2
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 9.5e-243 844.3 715 63.8
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 1.2e-242 844.0 814 58.4
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 4.0e-241 839.0 854 58.3
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.2e-240 837.4 761 63.1
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.7e-239 833.6 932 53.2
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 6.3e-239 831.6 955 51.8
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 7.0e-238 828.2 854 57.1
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 9.5e-235 817.8 776 60.1
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 2.8e-234 816.2 855 55.4
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 2.2e-231 806.6 615 69.9
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 2.3e-220 770.0 712 60.4
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 5.1e-220 768.8 828 55.3
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 9.9e-216 754.6 1047 47.4
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 2.9e-215 753.1 723 58.0
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 6.8e-209 731.9 702 58.0
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 1.0e-204 718.0 798 53.3
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 3.4e-200 703.0 820 51.7
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 7.8e-197 691.8 847 51.4
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.1e-195 688.0 708 57.2
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 5.8e-184 649.0 738 52.8
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 7.6e-176 622.1 1078 41.2
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 1.5e-171 607.8 949 40.0
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 7.7e-168 595.5 495 66.3
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 2.3e-156 557.4 577 55.8
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 7.4e-155 552.4 919 39.4
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 8.0e-149 532.3 1106 37.3
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.4e-145 521.5 773 40.8
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 4.0e-124 450.3 603 45.1
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 4.7e-93 347.1 425 50.1
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 4.9e-66 257.3 208 65.4
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 6.9e-60 236.9 192 66.7
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 5.9e-51 207.2 347 35.4
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 1.1e-46 193.0 197 59.4
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 7.2e-41 173.7 327 34.6
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 2.1e-24 119.0 114 55.3
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.7e-21 109.4 308 31.5
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.1e-20 106.7 75 69.3
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 1.8e-20 105.9 87 60.9
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-16 92.4 130 42.3
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.0e-15 90.1 72 56.9
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-13 80.5 290 25.9
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 1.1e-12 80.1 83 53.0
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 7.0e-12 77.4 70 62.9
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.0e-10 73.6 41 90.2
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.5e-09 68.9 38 92.1
Gohir.A06G109000 Gossypium hirsutum HOM05D005318 ORTHO05D006791 2.8e-08 65.5 90 34.4
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 3.0e-07 62.0 102 30.4
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 1.2e-06 60.1 172 26.2
Glyma.03G121100 Glycine max HOM05D005318 ORTHO05D006791 9.8e-06 57.0 109 29.4


User provided reference genes

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