Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1898 Cannabis sativa HOM05D000572 ORTHO05D002399 3.9e-66 254.6 123 100.0
CANSAT01G1917 Cannabis sativa HOM05D000572 ORTHO05D002399 5.4e-44 181.0 102 83.3
MELO3C026448.2 Cucumis melo HOM05D000572 ORTHO05D002399 1.6e-35 152.9 112 61.6
CsaV3_5G013990 Cucumis sativus L. HOM05D000572 ORTHO05D002399 1.6e-35 152.9 112 61.6
Nn5g27348 Nelumbo nucifera HOM05D000572 ORTHO05D002399 1.6e-35 152.9 112 63.4
Nn5g27349 Nelumbo nucifera HOM05D000572 ORTHO05D002399 1.6e-35 152.9 112 63.4
ClCG11G000400 Citrullus lanatus HOM05D000572 ORTHO05D002399 2.7e-35 152.1 94 70.2
Sed0009647 Sechium edule HOM05D000572 ORTHO05D002399 7.9e-35 150.6 110 61.8
Dinv19128 Davidia involucrata HOM05D000572 ORTHO05D002399 5.1e-34 147.9 109 63.3
Gohir.A05G373000 Gossypium hirsutum HOM05D000572 ORTHO05D002399 5.1e-34 147.9 112 61.6
Gohir.D04G042500 Gossypium hirsutum HOM05D000572 ORTHO05D002399 6.7e-34 147.5 112 61.6
Gorai.012G048000 Gossypium raimondii HOM05D000572 ORTHO05D002399 6.7e-34 147.5 112 61.6
Sc02g0000170 Simmondsia chinensis HOM05D000572 ORTHO05D002399 8.7e-34 147.1 99 64.6
Thecc.01G144800 Theobroma cacao HOM05D000572 ORTHO05D002399 1.9e-33 146.0 114 60.5
GSVIVG01000262001 Vitis vinifera HOM05D000572 ORTHO05D002399 1.9e-33 146.0 109 64.2
Dinv29674 Davidia involucrata HOM05D000572 ORTHO05D002399 4.3e-33 144.8 110 60.9
Lalb_Chr03g0033391 Lupinus albus HOM05D000572 ORTHO05D002399 5.6e-33 144.4 100 70.0
CiPaw.12G053900 Carya illinoinensis HOM05D000572 ORTHO05D002399 7.4e-33 144.1 113 62.8
Rhsim11G0118300 Rhododendron simsii HOM05D000572 ORTHO05D002399 7.4e-33 144.1 110 60.0
Duzib147G0313 Durio zibethinus HOM05D000572 ORTHO05D002399 1.3e-32 143.3 112 60.7
MBI03_g20877_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 1.6e-32 142.9 113 60.2
Haze_19377 Corylus avellana HOM05D000572 ORTHO05D002399 2.8e-32 142.1 109 65.1
Lalb_Chr01g0008651 Lupinus albus HOM05D000572 ORTHO05D002399 2.8e-32 142.1 99 69.7
COL.COLO4_12145 Corchorus olitorius HOM05D000572 ORTHO05D002399 3.7e-32 141.7 114 58.8
vmacro01683 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 3.7e-32 141.7 110 58.2
AUR62043444 Chenopodium quinoa HOM05D000572 ORTHO05D002399 4.8e-32 141.4 98 67.3
Lj2A766T19 Lonicera japonica HOM05D000572 ORTHO05D002399 4.8e-32 141.4 108 60.2
QL10p035076 Quercus lobata HOM05D000572 ORTHO05D002399 4.8e-32 141.4 109 65.1
Potri.004G134000 Populus trichocarpa HOM05D000572 ORTHO05D002399 6.2e-32 141.0 99 66.7
Sabra04G0084200 Salix brachista HOM05D000572 ORTHO05D002399 8.2e-32 140.6 99 67.7
PGR119G1310 Punica granatum HOM05D000572 ORTHO05D002399 1.1e-31 140.2 105 63.8
Sabra19G0000100 Salix brachista HOM05D000572 ORTHO05D002399 1.1e-31 140.2 99 67.7
VMungo0464G1362 Vigna mungo HOM05D000572 ORTHO05D002399 1.1e-31 140.2 115 60.9
TAR633G0967 Trochodendron aralioides HOM05D000572 ORTHO05D002399 2.4e-31 139.0 115 56.5
EL10Ac8g18295 Beta vulgaris HOM05D000572 ORTHO05D002399 3.1e-31 138.7 97 67.0
AUR62021310 Chenopodium quinoa HOM05D000572 ORTHO05D002399 3.1e-31 138.7 98 66.3
Prupe.7G183100 Prunus persica HOM05D000572 ORTHO05D002399 3.1e-31 138.7 103 62.1
VMungo0464G1539 Vigna mungo HOM05D000572 ORTHO05D002399 5.3e-31 137.9 116 57.8
MD02G1115100 Malus domestica HOM05D000572 ORTHO05D002399 6.9e-31 137.5 103 63.1
arahy.Tifrunner.gnm1.ann1.5512QZ Arachis hypogaea HOM05D000572 ORTHO05D002399 9.0e-31 137.1 110 60.9
arahy.Tifrunner.gnm1.ann1.I0VWWF Arachis hypogaea HOM05D000572 ORTHO05D002399 9.0e-31 137.1 110 60.9
Lj3g0025806 Lotus japonicus HOM05D000572 ORTHO05D002399 9.0e-31 137.1 113 60.2
Ah.04g152120 Amaranthus hybridus HOM05D000572 ORTHO05D002399 1.2e-30 136.7 98 65.3
DCAR_019941 Daucus carota HOM05D000572 ORTHO05D002399 1.2e-30 136.7 108 59.3
Medtr6g065580 Medicago truncatula HOM05D000572 ORTHO05D002399 1.2e-30 136.7 109 62.4
Glyma.06G178200 Glycine max HOM05D000572 ORTHO05D002399 1.5e-30 136.3 114 59.6
Potri.018G138000 Populus trichocarpa HOM05D000572 ORTHO05D002399 1.5e-30 136.3 99 65.7
Potri.T046100 Populus trichocarpa HOM05D000572 ORTHO05D002399 1.5e-30 136.3 99 65.7
Hund15395 Selenicereus undatus HOM05D000572 ORTHO05D002399 1.5e-30 136.3 101 62.4
MD15G1231100 Malus domestica HOM05D000572 ORTHO05D002399 3.4e-30 135.2 119 56.3
Atru.chr1.1803 Acer truncatum HOM05D000572 ORTHO05D002399 4.5e-30 134.8 112 58.0
Glyma.04G187600 Glycine max HOM05D000572 ORTHO05D002399 4.5e-30 134.8 113 59.3
Eucgr.I00036 Eucalyptus grandis HOM05D000572 ORTHO05D002399 7.6e-30 134.0 107 60.7
Lj2g0020412 Lotus japonicus HOM05D000572 ORTHO05D002399 7.6e-30 134.0 113 58.4
Medtr2g046020 Medicago truncatula HOM05D000572 ORTHO05D002399 7.6e-30 134.0 112 61.6
VMungo0647G2150 Vigna mungo HOM05D000572 ORTHO05D002399 7.6e-30 134.0 101 65.3
Peaxi162Scf01053g00039 Petunia axillaris HOM05D000572 ORTHO05D002399 1.3e-29 133.3 108 59.3
DCAR_003283 Daucus carota HOM05D000572 ORTHO05D002399 1.7e-29 132.9 114 53.5
Lj5A282T76 Lonicera japonica HOM05D000572 ORTHO05D002399 1.7e-29 132.9 98 61.2
Nitab4.5_0004345g0030 Nicotiana tabacum HOM05D000572 ORTHO05D002399 1.7e-29 132.9 108 59.3
CSS0016257 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.2e-29 132.5 94 64.9
CSS0042457 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.2e-29 132.5 94 64.9
Nitab4.5_0004640g0010 Nicotiana tabacum HOM05D000572 ORTHO05D002399 2.2e-29 132.5 108 59.3
Atru.chr12.1878 Acer truncatum HOM05D000572 ORTHO05D002399 2.9e-29 132.1 112 58.0
DCAR_009626 Daucus carota HOM05D000572 ORTHO05D002399 2.9e-29 132.1 102 59.8
CAN.G868.5 Capsicum annuum HOM05D000572 ORTHO05D002399 3.8e-29 131.7 108 58.3
Psat1g114520 Pisum sativum HOM05D000572 ORTHO05D002399 3.8e-29 131.7 110 59.1
Cc07_g19880 Coffea canephora HOM05D000572 ORTHO05D002399 6.5e-29 131.0 112 55.4
Manes.13G119400 Manihot esculenta HOM05D000572 ORTHO05D002399 6.5e-29 131.0 95 65.3
CAN.G1330.38 Capsicum annuum HOM05D000572 ORTHO05D002399 8.4e-29 130.6 107 58.9
Ca_03350_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 8.4e-29 130.6 110 59.1
Aqoxy7G03575 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 1.4e-28 129.8 116 51.7
Aqoxy7G03579 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 1.4e-28 129.8 116 51.7
Ciclev10027585m.g Citrus clementina HOM05D000572 ORTHO05D002399 1.4e-28 129.8 105 58.1
HanXRQChr04g0120041 Helianthus annuus HOM05D000572 ORTHO05D002399 2.5e-28 129.0 113 53.1
Phvul.004G133200 Phaseolus vulgaris HOM05D000572 ORTHO05D002399 2.5e-28 129.0 98 64.3
PGSC0003DMG400030941 Solanum tuberosum HOM05D000572 ORTHO05D002399 4.2e-28 128.3 108 58.3
ECA236G0624 Erigeron canadensis HOM05D000572 ORTHO05D002399 7.1e-28 127.5 110 55.5
HanXRQChr11g0347301 Helianthus annuus HOM05D000572 ORTHO05D002399 7.1e-28 127.5 104 57.7
CDE12G0633 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 9.3e-28 127.1 108 54.6
Manes.13G155232 Manihot esculenta HOM05D000572 ORTHO05D002399 9.3e-28 127.1 95 64.2
Solyc11g030600.3 Solanum lycopersicum HOM05D000572 ORTHO05D002399 1.2e-27 126.7 108 57.4
Sopen11g013460 Solanum pennellii HOM05D000572 ORTHO05D002399 1.2e-27 126.7 108 57.4
Lj5g0006387 Lotus japonicus HOM05D000572 ORTHO05D002399 2.1e-27 125.9 102 59.8
Duzib160G0412 Durio zibethinus HOM05D000572 ORTHO05D002399 2.7e-27 125.6 94 58.5
Lsat_1_v5_gn_7_75121 Lactuca sativa HOM05D000572 ORTHO05D002399 2.7e-27 125.6 112 56.2
THA.LOC104820805 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 2.7e-27 125.6 102 57.8
THA.LOC104823726 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 2.7e-27 125.6 88 63.6
Aa31LG11G8250 Aethionema arabicum HOM05D000572 ORTHO05D002399 3.5e-27 125.2 88 64.8
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 6.0e-27 124.4 108 51.9
TPR.G37134 Trifolium pratense HOM05D000572 ORTHO05D002399 2.3e-26 122.5 110 57.3
TWI63G0302 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 3.0e-26 122.1 112 52.7
Aqoxy1G02545 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 3.9e-26 121.7 107 51.4
ATR0584G123 Amborella trichopoda HOM05D000572 ORTHO05D002399 8.7e-26 120.6 97 58.8
GSVIVG01000263001 Vitis vinifera HOM05D000572 ORTHO05D002399 1.1e-25 120.2 89 62.9
TWI15G0599 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 1.5e-25 119.8 101 57.4
Oeu032220.1 Olea europaea HOM05D000572 ORTHO05D002399 2.5e-25 119.0 111 53.2
Ciclev10003543m.g Citrus clementina HOM05D000572 ORTHO05D002399 3.3e-25 118.6 94 57.4
SGA_v2.0_scaffold8G04469 Striga asiatica HOM05D000572 ORTHO05D002399 3.3e-25 118.6 102 54.9
MSTRG.27892 Avicennia marina HOM05D000572 ORTHO05D002399 5.7e-25 117.9 102 53.9
Ciclev10003166m.g Citrus clementina HOM05D000572 ORTHO05D002399 9.7e-25 117.1 94 57.4
Migut.N00875 Erythranthe guttata HOM05D000572 ORTHO05D002399 1.3e-24 116.7 100 54.0
HPP92_005786 Vanilla planifolia HOM05D000572 ORTHO05D002399 1.3e-24 116.7 105 54.3
SGA_v2.0_scaffold122G33283 Striga asiatica HOM05D000572 ORTHO05D002399 2.2e-24 115.9 96 55.2
TPR.G31040 Trifolium pratense HOM05D000572 ORTHO05D002399 2.8e-24 115.5 110 53.6
AUR62028017 Chenopodium quinoa HOM05D000572 ORTHO05D002399 3.7e-24 115.2 97 58.8
Ah.01g020670 Amaranthus hybridus HOM05D000572 ORTHO05D002399 1.1e-23 113.6 98 58.2
TAR628G1524 Trochodendron aralioides HOM05D000572 ORTHO05D002399 1.1e-23 113.6 99 57.6
SEGI_36703 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 1.8e-23 112.8 120 46.7
RcHm_v2.0_Chr2g0097141 Rosa chinensis HOM05D000572 ORTHO05D002399 4.1e-23 111.7 114 54.4
AT4G14140 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 6.9e-23 110.9 120 42.5
AT4G08990 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.2e-22 110.2 110 46.4
Sp2g19890 Schrenkiella parvula HOM05D000572 ORTHO05D002399 3.4e-22 108.6 101 50.5
AL7G42360 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 7.6e-22 107.5 120 44.2
Sp4g01970 Schrenkiella parvula HOM05D000572 ORTHO05D002399 7.6e-22 107.5 103 52.4
SEGI_20274 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 7.6e-22 107.5 120 44.2
AUR62001560 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.0e-21 107.1 74 70.3
SEGI_11646 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 1.3e-21 106.7 120 44.2
vmacro19834 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 1.3e-21 106.7 102 52.9
Oeu046383.1 Olea europaea HOM05D000572 ORTHO05D002399 1.7e-21 106.3 88 58.0
FAN26G0750 Fragaria x ananassa HOM05D000572 ORTHO05D002399 2.2e-21 105.9 102 55.9
FvH4_1g10300 Fragaria vesca HOM05D000572 ORTHO05D002399 2.9e-21 105.5 102 55.9
FAN19G1502 Fragaria x ananassa HOM05D000572 ORTHO05D002399 2.9e-21 105.5 102 55.9
CARHR182510 Cardamine hirsuta HOM05D000572 ORTHO05D002399 3.8e-21 105.1 87 56.3
AL8G22690 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 8.5e-21 104.0 101 51.5
AT5G49160 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 8.5e-21 104.0 101 50.5
A09p57170 Brassica napus HOM05D000572 ORTHO05D002399 1.4e-20 103.2 86 60.5
BolC8t51587H Brassica oleracea HOM05D000572 ORTHO05D002399 1.4e-20 103.2 86 60.5
BraA09t41110Z Brassica rapa HOM05D000572 ORTHO05D002399 1.4e-20 103.2 86 60.5
Dinv29626 Davidia involucrata HOM05D000572 ORTHO05D002399 1.4e-20 103.2 62 75.8
AL7G42980 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 1.9e-20 102.8 119 45.4
BcaC07g41015 Brassica carinata HOM05D000572 ORTHO05D002399 1.9e-20 102.8 86 59.3
C08p40170 Brassica napus HOM05D000572 ORTHO05D002399 3.2e-20 102.1 86 59.3
RcHm_v2.0_Chr5g0051581 Rosa chinensis HOM05D000572 ORTHO05D002399 4.2e-20 101.7 114 51.8
SHI05188 Sapria himalayana HOM05D000572 ORTHO05D002399 5.5e-20 101.3 100 48.0
Pp3c11_20540 Physcomitrium patens HOM05D000572 ORTHO05D002399 1.2e-19 100.1 98 49.0
Thhalv10003514m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 1.6e-19 99.8 87 57.5
Carub.0004s0387 Capsella rubella HOM05D000572 ORTHO05D002399 2.1e-19 99.4 117 41.9
VMungo0199G0001 Vigna mungo HOM05D000572 ORTHO05D002399 2.7e-19 99.0 71 66.2
C04p52290 Brassica napus HOM05D000572 ORTHO05D002399 1.0e-18 97.1 101 50.5
BcaC02g08585 Brassica carinata HOM05D000572 ORTHO05D002399 1.4e-18 96.7 101 50.5
BolC4t26803H Brassica oleracea HOM05D000572 ORTHO05D002399 1.4e-18 96.7 101 50.5
PSO210G2968 Papaver somniferum HOM05D000572 ORTHO05D002399 1.8e-18 96.3 87 55.2
PSO447G0024 Papaver somniferum HOM05D000572 ORTHO05D002399 1.8e-18 96.3 87 56.3
BcaB06g27851 Brassica carinata HOM05D000572 ORTHO05D002399 3.9e-18 95.1 88 52.3
BraA04t17374Z Brassica rapa HOM05D000572 ORTHO05D002399 1.1e-17 93.6 101 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2421 Anthoceros agrestis HOM05D000572 ORTHO05D002399 5.7e-17 91.3 80 48.8
TPR.G40583 Trifolium pratense HOM05D000572 ORTHO05D002399 5.7e-17 91.3 57 73.7
A04p17510 Brassica napus HOM05D000572 ORTHO05D002399 9.7e-17 90.5 87 51.7
Thhalv10005683m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 1.3e-16 90.1 94 48.9
Carub.0008s0898 Capsella rubella HOM05D000572 ORTHO05D002399 4.8e-16 88.2 107 43.9
Thhalv10000011m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 8.2e-16 87.4 79 49.4
Os03g0798300 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 1.1e-15 87.0 99 46.5
Carub.0007s2893 Capsella rubella HOM05D000572 ORTHO05D002399 1.4e-15 86.7 114 39.5
Zm00001eb301630 Zea mays HOM05D000572 ORTHO05D002399 3.1e-15 85.5 102 46.1
Mapoly0038s0027 Marchantia polymorpha HOM05D000572 ORTHO05D002399 4.1e-15 85.1 84 48.8
Zm00001eb301620 Zea mays HOM05D000572 ORTHO05D002399 4.1e-15 85.1 102 45.1
SMO358G0070 Selaginella moellendorffii HOM05D000572 ORTHO05D002399 5.3e-15 84.7 107 38.3
AT4G13610 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.0e-13 80.5 82 48.8
Os07g0182900 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 1.7e-13 79.7 81 49.4
Cc02_g23510 Coffea canephora HOM05D000572 ORTHO05D002399 1.8e-10 69.7 94 39.4
C07p39990 Brassica napus HOM05D000572 ORTHO05D002399 2.8e-08 62.4 66 51.5
HPP92_005802 Vanilla planifolia HOM05D000572 ORTHO05D002399 3.1e-07 58.9 48 54.2
CARHR185430 Cardamine hirsuta HOM05D000572 ORTHO05D002399 7.0e-07 57.8 52 55.8
VMungo0647G0272 Vigna mungo HOM05D000572 ORTHO05D002399 7.0e-07 57.8 61 54.1


User provided reference genes

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