Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1907.1 960 100.0
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1673.3 962 86.3
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1668.7 964 86.1
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1666.7 961 86.4
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1665.6 963 86.4
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1663.7 963 85.9
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1661.4 961 86.3
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1658.3 962 85.9
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1653.6 962 85.3
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1653.6 962 85.3
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1651.7 951 86.2
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1648.3 962 86.0
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1642.9 962 84.7
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1641.3 953 85.5
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1636.7 961 84.0
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1631.3 953 85.2
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1629.4 962 83.7
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1625.1 950 85.5
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1621.3 962 84.3
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1617.4 949 85.2
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1616.3 949 85.1
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1614.7 952 84.7
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1613.2 947 84.2
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1612.8 962 84.5
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1611.7 949 85.0
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1609.7 949 84.3
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1607.8 962 83.3
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1607.4 949 84.6
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1605.9 961 81.9
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1605.5 941 85.0
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1605.5 942 84.1
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1605.1 954 83.9
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1602.8 974 83.7
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1602.4 962 83.4
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1602.4 962 83.4
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1597.8 949 84.2
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1595.5 963 83.3
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1594.3 962 82.7
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1588.2 962 82.7
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1587.4 961 81.2
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1583.9 964 82.5
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 957 81.6
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1568.5 969 81.9
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1565.4 973 80.7
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 961 80.6
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 957 82.1
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 971 81.1
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1562.0 971 80.9
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1561.6 969 81.1
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 970 80.5
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1557.0 967 81.3
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 961 79.9
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1551.2 960 80.6
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1551.2 974 79.9
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 972 80.5
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1547.3 959 79.6
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 962 79.9
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 959 78.9
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1541.2 961 79.5
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 959 79.5
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1538.1 959 79.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1538.1 948 80.4
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1537.3 960 80.1
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 961 79.1
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 948 80.6
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 962 79.5
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 1001 78.4
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 957 79.4
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 970 78.9
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1529.2 942 80.3
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 942 80.3
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 946 80.4
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 964 80.4
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 942 80.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 942 80.0
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1527.3 963 79.6
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1526.9 963 79.2
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1524.2 942 80.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 942 79.9
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 942 79.9
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 963 77.6
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1521.9 946 79.9
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1521.1 973 78.3
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 963 77.5
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1518.8 942 79.7
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 962 79.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 945 79.7
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 957 78.6
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 946 79.3
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 969 79.2
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 957 78.4
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1504.2 942 79.2
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1503.8 966 77.7
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1503.4 966 78.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1501.9 965 78.4
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 951 78.3
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 981 76.8
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1494.6 958 78.0
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1493.8 946 78.2
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 957 76.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1444.5 832 86.2
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1432.5 959 75.2
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1424.5 956 72.5
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1422.1 949 72.7
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1377.8 958 72.3
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1334.7 964 69.3
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1327.8 959 71.3
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1317.4 849 78.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1301.6 855 76.3
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1243.0 961 67.3
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1233.8 732 83.9
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1199.1 998 59.9
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1191.8 956 61.7
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1166.0 715 80.4
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1120.5 666 83.6
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1112.1 1022 55.0
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1107.8 651 84.5
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1098.6 943 59.5
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 7.7e-279 964.1 711 67.5
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 6.0e-223 778.5 756 52.5
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 2.6e-218 763.1 464 80.4
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.1e-183 645.6 450 71.6
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.2e-131 472.2 303 72.9
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.1e-112 412.1 1306 24.7
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 6.7e-105 386.3 642 37.9
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 5.3e-86 323.6 202 79.2
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.5e-72 278.9 207 68.6
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.0e-62 243.4 184 69.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.5e-56 225.7 299 44.8
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.6e-50 204.5 125 80.8
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 3.8e-44 184.5 132 71.2
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 1.4e-38 166.0 139 62.6
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.7e-37 161.8 201 44.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.2e-30 136.7 64 96.9
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 4.0e-17 94.7 80 62.5
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 5.8e-08 64.3 45 71.1
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 1.4e-06 59.7 130 34.6
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 1.9e-06 59.3 101 39.6


User provided reference genes

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