Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1700 Cannabis sativa HOM05D007289 ORTHO05D009215 5.4e-215 750.7 385 100.0
Prupe.3G073900 Prunus persica HOM05D007289 ORTHO05D009215 3.2e-119 432.6 398 60.8
MD17G1197800 Malus domestica HOM05D007289 ORTHO05D009215 3.6e-118 429.1 392 60.5
CSS0039074 Camellia sinensis var. sinensis HOM05D007289 ORTHO05D009215 3.1e-114 416.0 378 59.5
Dinv30529 Davidia involucrata HOM05D007289 ORTHO05D009215 9.2e-114 414.5 391 59.6
TAR383G0594 Trochodendron aralioides HOM05D007289 ORTHO05D009215 2.9e-112 409.5 398 58.0
RcHm_v2.0_Chr2g0137421 Rosa chinensis HOM05D007289 ORTHO05D009215 1.0e-109 401.0 388 57.0
FAN02G0535 Fragaria x ananassa HOM05D007289 ORTHO05D009215 3.4e-108 396.0 387 57.9
FvH4_6g30910 Fragaria vesca HOM05D007289 ORTHO05D009215 3.7e-107 392.5 387 57.9
Psat5g299280 Pisum sativum HOM05D007289 ORTHO05D009215 1.4e-106 390.6 381 56.7
Ca_01106_v3 Cicer arietinum L. HOM05D007289 ORTHO05D009215 2.4e-106 389.8 378 56.1
vmacro18934 Vaccinium macrocarpon HOM05D007289 ORTHO05D009215 2.0e-105 386.7 384 57.0
Lj9C506T12 Lonicera japonica HOM05D007289 ORTHO05D009215 5.0e-104 382.1 402 54.7
Atru.chr1.3224 Acer truncatum HOM05D007289 ORTHO05D009215 6.6e-104 381.7 392 57.4
VMungo1080G1522 Vigna mungo HOM05D007289 ORTHO05D009215 1.9e-103 380.2 396 53.0
Ciclev10025766m.g Citrus clementina HOM05D007289 ORTHO05D009215 4.3e-103 379.0 383 55.1
Cfa002049 Carpinus fangiana HOM05D007289 ORTHO05D009215 5.6e-103 378.6 395 56.2
Medtr2g102430 Medicago truncatula HOM05D007289 ORTHO05D009215 1.2e-102 377.5 383 54.0
Potri.001G178100 Populus trichocarpa HOM05D007289 ORTHO05D009215 2.1e-102 376.7 329 61.4
CiPaw.02G152300 Carya illinoinensis HOM05D007289 ORTHO05D009215 8.0e-102 374.8 358 57.0
TPR.G37243 Trifolium pratense HOM05D007289 ORTHO05D009215 8.0e-102 374.8 378 53.4
Glyma.13G360800 Glycine max HOM05D007289 ORTHO05D009215 2.3e-101 373.2 396 52.3
MELO3C023367.2 Cucumis melo HOM05D007289 ORTHO05D009215 4.4e-100 369.0 387 54.5
Lj3g0010801 Lotus japonicus HOM05D007289 ORTHO05D009215 4.4e-100 369.0 394 52.3
Phvul.005G172600 Phaseolus vulgaris HOM05D007289 ORTHO05D009215 5.8e-100 368.6 391 51.9
PGR102G0666 Punica granatum HOM05D007289 ORTHO05D009215 9.8e-100 367.9 385 56.6
Manes.04G121300 Manihot esculenta HOM05D007289 ORTHO05D009215 2.9e-99 366.3 385 55.6
Lalb_Chr14g0373531 Lupinus albus HOM05D007289 ORTHO05D009215 4.9e-99 365.5 381 53.0
Lalb_Chr22g0351171 Lupinus albus HOM05D007289 ORTHO05D009215 4.9e-99 365.5 384 53.1
PSO782G0119 Papaver somniferum HOM05D007289 ORTHO05D009215 8.3e-99 364.8 388 53.9
Sed0021795 Sechium edule HOM05D007289 ORTHO05D009215 8.3e-99 364.8 395 54.7
Rhsim08G0218600 Rhododendron simsii HOM05D007289 ORTHO05D009215 1.1e-98 364.4 390 52.8
QL05p025382 Quercus lobata HOM05D007289 ORTHO05D009215 1.9e-98 363.6 385 54.0
CsaV3_7G033000 Cucumis sativus L. HOM05D007289 ORTHO05D009215 2.4e-98 363.2 387 53.7
Aqoxy7G01850 Aquilegia oxysepala HOM05D007289 ORTHO05D009215 4.1e-98 362.5 393 51.4
Thecc.06G082700 Theobroma cacao HOM05D007289 ORTHO05D009215 1.2e-97 360.9 312 62.5
TWI75G1369 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 1.2e-97 360.9 370 55.1
Cc04_g03590 Coffea canephora HOM05D007289 ORTHO05D009215 2.0e-97 360.1 362 53.3
Gohir.A02G122500 Gossypium hirsutum HOM05D007289 ORTHO05D009215 2.0e-97 360.1 367 54.5
Hund06601 Selenicereus undatus HOM05D007289 ORTHO05D009215 2.0e-97 360.1 388 51.5
Gorai.002G058300 Gossypium raimondii HOM05D007289 ORTHO05D009215 2.7e-97 359.8 367 54.8
DCAR_016227 Daucus carota HOM05D007289 ORTHO05D009215 3.5e-97 359.4 390 52.3
MBI04_g26647_MAGBIO Magnolia biondii HOM05D007289 ORTHO05D009215 4.6e-97 359.0 356 54.8
GSVIVG01017153001 Vitis vinifera HOM05D007289 ORTHO05D009215 1.7e-96 357.1 329 59.6
arahy.Tifrunner.gnm1.ann1.UJ7D22 Arachis hypogaea HOM05D007289 ORTHO05D009215 5.0e-96 355.5 375 51.5
Sabra01G0148500 Salix brachista HOM05D007289 ORTHO05D009215 8.6e-96 354.8 361 56.2
PGSC0003DMG400016511 Solanum tuberosum HOM05D007289 ORTHO05D009215 8.6e-96 354.8 383 52.2
COL.COLO4_30328 Corchorus olitorius HOM05D007289 ORTHO05D009215 1.9e-95 353.6 376 55.1
arahy.Tifrunner.gnm1.ann1.HRS6MU Arachis hypogaea HOM05D007289 ORTHO05D009215 4.3e-95 352.4 375 52.0
Solyc06g066780.3 Solanum lycopersicum HOM05D007289 ORTHO05D009215 2.1e-94 350.1 385 51.2
Aa31LG4G690 Aethionema arabicum HOM05D007289 ORTHO05D009215 4.7e-94 349.0 379 54.4
Sopen06g025060 Solanum pennellii HOM05D007289 ORTHO05D009215 4.7e-94 349.0 385 51.2
Nitab4.5_0002327g0060 Nicotiana tabacum HOM05D007289 ORTHO05D009215 6.2e-94 348.6 394 51.5
MSTRG.11091 Avicennia marina HOM05D007289 ORTHO05D009215 8.1e-94 348.2 383 49.9
Sc12g0009160 Simmondsia chinensis HOM05D007289 ORTHO05D009215 1.4e-93 347.4 385 53.0
Oeu033497.1 Olea europaea HOM05D007289 ORTHO05D009215 8.9e-93 344.7 358 53.9
AT1G80420 Arabidopsis thaliana HOM05D007289 ORTHO05D009215 3.4e-92 342.8 379 52.0
Actinidia15825 Actinidia chinensis HOM05D002927 ORTHO05D003841 7.5e-92 341.7 328 58.5
CARHR074820 Cardamine hirsuta HOM05D007289 ORTHO05D009215 7.5e-92 341.7 371 53.1
FAN09G0173 Fragaria x ananassa HOM05D007289 ORTHO05D009215 9.9e-92 341.3 353 54.4
Thhalv10018735m.g Eutrema salsugineum HOM05D007289 ORTHO05D009215 1.7e-91 340.5 375 51.7
Peaxi162Scf00207g00834 Petunia axillaris HOM05D007289 ORTHO05D009215 4.9e-91 339.0 305 57.7
Carub.0002s2715 Capsella rubella HOM05D007289 ORTHO05D009215 6.4e-91 338.6 375 52.3
THA.LOC104808206 Tarenaya hassleriana HOM05D007289 ORTHO05D009215 6.4e-91 338.6 390 53.3
Lsat_1_v5_gn_4_103480 Lactuca sativa HOM05D007289 ORTHO05D009215 4.1e-90 335.9 379 50.4
AL2G41080 Arabidopsis lyrata HOM05D007289 ORTHO05D009215 9.2e-90 334.7 372 52.2
CAN.G395.19 Capsicum annuum HOM05D007289 ORTHO05D009215 2.1e-89 333.6 384 48.7
HanXRQChr16g0501051 Helianthus annuus HOM05D007289 ORTHO05D009215 3.5e-89 332.8 352 52.0
Sp5g35390 Schrenkiella parvula HOM05D007289 ORTHO05D009215 1.7e-88 330.5 372 52.4
ECA232G0523 Erigeron canadensis HOM05D007289 ORTHO05D009215 3.3e-87 326.2 380 50.8
Migut.I00845 Erythranthe guttata HOM05D007289 ORTHO05D009215 7.3e-87 325.1 374 49.5
A02p23560 Brassica napus HOM05D007289 ORTHO05D009215 9.5e-87 324.7 378 50.0
BraA02t07349Z Brassica rapa HOM05D007289 ORTHO05D009215 9.5e-87 324.7 378 50.0
AUR62016430 Chenopodium quinoa HOM05D007289 ORTHO05D009215 9.5e-87 324.7 385 46.8
AUR62011614 Chenopodium quinoa HOM05D007289 ORTHO05D009215 6.2e-86 322.0 388 46.4
Os06g0144000 Oryza sativa ssp. japonica HOM05D007289 ORTHO05D009215 6.2e-86 322.0 374 49.7
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 5.2e-85 318.9 302 57.6
BolC2t09743H Brassica oleracea HOM05D007289 ORTHO05D009215 5.2e-85 318.9 371 50.1
C02p37330 Brassica napus HOM05D007289 ORTHO05D009215 1.2e-84 317.8 371 50.1
BcaC03g15968 Brassica carinata HOM05D007289 ORTHO05D009215 1.5e-84 317.4 371 49.9
ATR0037G063 Amborella trichopoda HOM05D007289 ORTHO05D009215 4.9e-83 312.4 405 46.2
Nn8g39279 Nelumbo nucifera HOM05D007289 ORTHO05D009215 1.1e-82 311.2 371 50.9
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 4.1e-82 309.3 392 46.7
Duzib235G0864 Durio zibethinus HOM05D007289 ORTHO05D009215 8.1e-78 295.0 364 50.0
PSO339G0085 Papaver somniferum HOM05D007289 ORTHO05D009215 8.1e-78 295.0 275 56.4
EL10Ac9g21988 Beta vulgaris HOM05D007289 ORTHO05D009215 3.4e-76 289.7 450 41.1
SalBow2G1977 Salvia bowleyana HOM05D007289 ORTHO05D009215 2.3e-72 276.9 380 46.1
Haze_16457 Corylus avellana HOM05D007289 ORTHO05D009215 6.2e-70 268.9 579 36.1
Cpa.g.sc10.164 Carica papaya HOM05D007289 ORTHO05D009215 2.0e-68 263.8 293 49.1
SEGI_14605 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 6.4e-67 258.8 364 41.5
HPP92_000676 Vanilla planifolia HOM05D007289 ORTHO05D009215 1.2e-60 238.0 270 48.5
Glyma.15G013100 Glycine max HOM05D007289 ORTHO05D009215 3.5e-57 226.5 240 52.9
Eucgr.F03006 Eucalyptus grandis HOM05D007289 ORTHO05D009215 7.4e-55 218.8 230 53.0
Pp3c15_20480 Physcomitrium patens HOM05D007289 ORTHO05D009215 2.0e-52 210.7 313 39.3
FAN05G4017 Fragaria x ananassa HOM05D007289 ORTHO05D009215 1.1e-50 204.9 203 58.1
FAN05G4871 Fragaria x ananassa HOM05D007289 ORTHO05D009215 7.9e-49 198.7 116 81.0
ClCG09G002310 Citrullus lanatus HOM05D007289 ORTHO05D009215 1.3e-48 198.0 188 59.6
Gohir.D03G073900 Gossypium hirsutum HOM05D007289 ORTHO05D009215 1.1e-47 194.9 202 53.0
TWI12G0812 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 6.5e-43 179.1 200 52.5
Mapoly0044s0047 Marchantia polymorpha HOM05D007289 ORTHO05D009215 3.2e-42 176.8 372 33.3
unitig_21.g20513 Utricularia gibba HOM05D007289 ORTHO05D009215 5.1e-40 169.5 396 36.6
Nitab4.5_0021849g0010 Nicotiana tabacum HOM05D007289 ORTHO05D009215 7.4e-39 165.6 205 47.8
SEGI_13111 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 2.4e-37 160.6 194 48.5
Zm00001eb377280 Zea mays HOM05D007289 ORTHO05D009215 1.1e-31 141.7 190 44.7
ClCG09G002320 Citrullus lanatus HOM05D007289 ORTHO05D009215 2.2e-30 137.5 262 39.3
CBR_g23739 Chara braunii HOM05D007289 ORTHO05D009215 8.2e-30 135.6 141 48.2
Lj2P1136T43 Lonicera japonica HOM05D007289 ORTHO05D009215 1.3e-27 128.3 111 60.4
Hma1.2p1_0845F.1_g227540 Hydrangea macrophylla HOM05D007289 ORTHO05D009215 3.6e-25 120.2 129 53.5
Ah.01g011120 Amaranthus hybridus HOM05D007289 ORTHO05D009215 7.7e-20 102.4 144 42.4
Pp3c21_18730 Physcomitrium patens HOM05D007289 ORTHO05D009215 2.5e-10 70.9 129 31.8
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 4.8e-06 56.6 81 35.8


User provided reference genes

Program Settings