Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 1.1e-232 809.7 423 100.0
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 3.1e-179 632.1 439 77.9
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.4e-171 606.7 439 73.8
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 6.4e-169 597.8 429 75.3
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 6.4e-169 597.8 438 74.7
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.1e-168 597.0 437 75.1
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 1.4e-168 596.7 448 74.6
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 5.4e-168 594.7 405 79.0
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 1.0e-166 590.5 438 74.2
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 3.9e-166 588.6 440 73.4
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 6.6e-166 587.8 440 73.6
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 6.6e-166 587.8 435 73.6
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.5e-165 586.6 438 74.4
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 1.3e-164 583.6 431 73.3
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 3.6e-164 582.0 440 74.8
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 3.6e-164 582.0 435 73.8
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.8e-164 581.6 438 74.7
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.4e-163 580.1 438 74.4
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 2.4e-163 579.3 435 73.6
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 2.4e-163 579.3 438 72.4
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.9e-163 577.8 438 74.7
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 9.9e-162 573.9 436 71.8
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 1.7e-161 573.2 430 72.8
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 4.9e-161 571.6 425 72.7
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.1e-160 570.5 438 71.0
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.9e-160 569.7 438 72.4
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 3.2e-160 568.9 436 70.6
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 7.1e-160 567.8 438 71.0
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 1.1e-157 560.5 443 70.7
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.3e-157 558.9 408 72.5
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 5.3e-155 551.6 436 69.5
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 2.6e-154 549.3 521 61.4
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.3e-153 547.0 521 62.8
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 1.3e-153 547.0 444 67.6
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 6.4e-153 544.7 425 71.5
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 9.3e-152 540.8 434 70.3
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 1.2e-151 540.4 445 69.7
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 1.0e-150 537.3 433 69.5
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 5.1e-150 535.0 433 68.1
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 3.3e-149 532.3 444 67.8
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 5.6e-149 531.6 425 68.2
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.7e-148 528.9 436 67.2
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.1e-147 527.3 410 70.7
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 6.9e-147 524.6 436 67.0
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 2.6e-146 522.7 360 77.5
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 5.8e-146 521.5 428 68.2
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.0e-145 520.8 425 67.1
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 2.9e-145 519.2 426 67.4
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 2.9e-145 519.2 424 67.7
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 8.4e-145 517.7 431 66.4
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 7.1e-144 514.6 435 66.4
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.5e-143 512.3 440 67.3
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 3.5e-143 512.3 559 56.5
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 2.3e-142 509.6 430 67.2
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 8.7e-142 507.7 539 57.9
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 3.3e-141 505.8 433 65.4
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.6e-140 503.4 424 67.2
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 3.1e-139 499.2 431 65.4
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 5.3e-139 498.4 441 63.3
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 2.6e-138 496.1 373 71.0
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.3e-137 493.8 435 64.4
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 3.8e-137 492.3 438 63.9
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 5.0e-137 491.9 404 67.3
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 9.4e-136 487.6 441 62.8
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 9.4e-136 487.6 323 80.5
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 1.6e-135 486.9 442 62.9
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 4.6e-135 485.3 357 74.2
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 6.1e-135 485.0 444 62.4
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.9e-133 479.9 428 64.3
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 9.7e-133 477.6 435 64.4
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 1.7e-129 466.8 354 72.6
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 2.2e-124 449.9 424 60.8
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 4.1e-123 445.7 431 61.7
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 2.6e-122 443.0 353 69.4
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 7.7e-122 441.4 427 60.4
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.0e-121 441.0 432 60.6
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 1.3e-121 440.7 453 58.5
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 3.8e-121 439.1 360 69.7
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 3.8e-121 439.1 409 58.4
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 5.0e-121 438.7 423 61.0
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 8.5e-121 438.0 362 67.4
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 1.4e-120 437.2 345 68.4
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.2e-119 434.1 360 67.8
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 3.6e-119 432.6 426 57.3
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 6.1e-119 431.8 440 56.8
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 2.3e-118 429.9 435 56.1
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 3.9e-118 429.1 357 65.5
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 9.7e-117 424.5 433 58.9
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 9.1e-115 417.9 435 58.4
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 1.2e-114 417.5 364 64.0
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 3.8e-113 412.5 347 66.3
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 1.1e-112 411.0 347 67.1
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 2.7e-111 406.4 329 68.4
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 2.7e-111 406.4 428 56.8
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 2.6e-109 399.8 353 64.0
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 5.9e-106 388.7 420 56.7
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.9e-105 386.3 345 63.2
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.5e-104 384.0 344 62.5
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 4.2e-104 382.5 409 53.5
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 5.5e-104 382.1 351 62.7
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 2.0e-101 373.6 345 61.4
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.0e-98 363.6 431 51.5
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.0e-97 361.3 415 52.0
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 3.4e-93 346.3 426 49.1
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.0e-89 334.7 426 50.7
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 4.3e-88 329.3 323 56.3
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 4.4e-85 319.3 397 53.7
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.6e-79 300.8 362 52.2
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 4.6e-74 282.7 224 68.8
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.6e-74 282.7 304 58.6
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 4.4e-69 266.2 325 52.3
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 4.1e-67 259.6 214 64.0
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 8.1e-63 245.4 231 64.1
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.3e-47 194.9 295 38.3
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 3.6e-47 193.4 308 40.9
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 3.7e-39 166.8 331 39.3
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 4.0e-38 163.3 139 60.4
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.8e-31 139.8 79 91.1
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 2.4e-30 137.5 79 89.9
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 9.0e-30 135.6 79 88.6
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.2e-29 135.2 79 87.3
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 7.6e-29 132.5 72 94.4
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 2.2e-28 131.0 79 83.5
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 3.8e-28 130.2 79 84.8
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 1.1e-27 128.6 79 83.5
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.9e-27 127.9 78 82.1
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 5.5e-27 126.3 79 83.5
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 1.2e-26 125.2 79 83.5
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 3.5e-26 123.6 79 78.5
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 2.3e-25 120.9 79 78.5
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 2.3e-25 120.9 79 78.5
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 8.2e-15 85.9 92 56.5
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.5e-13 80.1 50 80.0
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 8.5e-12 75.9 90 46.7
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.1e-08 65.5 52 65.4
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 1.1e-08 65.5 32 96.9
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.1e-06 58.9 95 41.1


User provided reference genes

Program Settings