Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1317.8 679 100.0
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1144.8 677 87.3
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1140.6 675 86.1
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 675 86.7
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1135.2 677 85.8
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 676 85.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1131.7 677 86.0
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1129.4 674 85.5
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1127.5 676 85.9
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1127.1 674 85.3
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 673 86.3
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 674 85.0
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1123.2 673 86.2
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 677 84.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1121.7 679 85.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1119.8 677 84.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1119.4 675 84.9
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 679 85.1
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 675 86.2
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1116.3 678 85.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 681 84.7
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1113.6 674 84.7
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1113.2 679 83.9
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1112.8 681 84.6
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1112.8 677 85.5
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1112.8 677 84.5
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1110.9 674 85.0
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1110.5 677 84.0
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 677 84.3
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1108.2 677 83.0
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 674 83.7
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1106.3 673 85.1
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 677 85.2
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1102.0 666 84.1
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1099.0 678 82.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1099.0 668 85.2
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 655 86.1
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1097.4 672 83.6
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1095.1 679 82.5
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1094.3 674 84.3
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 675 82.8
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 658 84.2
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 658 84.2
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 676 82.4
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 719 79.8
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 669 82.8
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1089.3 709 80.5
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 668 83.2
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 691 81.3
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 668 82.3
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 677 82.1
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1083.2 676 81.7
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1083.2 674 81.5
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 676 81.5
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 668 82.0
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 678 82.0
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 677 81.8
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 677 81.8
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1080.5 665 82.1
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1080.5 677 81.8
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 685 81.3
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 677 80.8
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 682 81.4
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1077.4 678 81.3
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 9.3e-312 1072.8 687 80.1
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.7e-310 1068.1 687 80.5
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 677 82.0
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 8.7e-309 1063.1 695 79.0
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.1e-308 1062.8 697 79.9
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 4.3e-308 1060.8 702 79.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 3.1e-306 1054.7 707 77.5
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 8.4e-304 1046.6 689 80.1
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.0e-301 1039.6 675 78.8
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 2.4e-298 1028.5 649 79.0
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 1.5e-297 1025.8 734 74.3
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.0e-297 1025.4 675 77.2
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.2e-296 1021.9 648 79.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-292 1009.2 699 76.1
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.9e-292 1008.8 761 72.3
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.1e-287 990.3 657 78.8
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.9e-284 982.2 677 77.1
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.1e-279 966.5 679 75.1
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 4.6e-278 961.1 584 82.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 2.2e-275 952.2 602 81.6
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 6.9e-274 947.2 594 81.0
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.2e-270 936.4 673 70.9
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 2.3e-269 932.2 654 71.3
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 9.7e-268 926.8 682 72.0
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 5.9e-265 917.5 657 74.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.5e-263 912.1 671 69.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 2.3e-261 905.6 656 70.6
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 1.3e-259 899.8 674 73.4
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.9e-257 891.0 513 85.8
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 2.9e-256 888.6 676 66.7
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.0e-252 875.9 648 72.8
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.5e-249 864.8 714 66.8
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.0e-245 852.0 714 66.0
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.2e-233 813.5 443 89.8
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 7.5e-212 741.1 471 77.1
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 7.3e-199 698.0 668 54.9
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 4.5e-180 635.6 382 79.8
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-178 630.9 542 62.2
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 7.4e-175 618.2 678 51.2
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 9.6e-175 617.8 672 50.3
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 6.2e-174 615.1 371 86.8
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 3.4e-172 609.4 395 80.0
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.2e-164 584.3 363 81.5
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.2e-163 580.1 384 78.1
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.5e-143 514.2 367 72.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.3e-142 511.1 311 84.2
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.1e-137 492.3 311 80.4
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.3e-136 490.3 313 79.6
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.3e-136 490.3 614 49.7
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 2.5e-114 417.2 301 73.8
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-110 404.8 467 51.4
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.5e-79 301.6 220 72.7
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.9e-77 294.7 222 68.5
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.6e-65 255.0 178 77.5
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 8.7e-59 232.6 234 59.0
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.4e-55 220.7 248 52.8
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 6.0e-52 209.9 104 90.4
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 6.7e-51 206.5 216 57.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 4.8e-49 200.3 198 54.0
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 4.6e-36 157.1 190 50.5
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.3e-35 154.8 471 32.9
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 6.7e-35 153.3 86 91.9
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 8.8e-35 152.9 408 31.6
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.2e-33 148.3 87 81.6
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.8e-33 147.9 87 81.6
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.4e-32 144.8 87 80.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 1.1e-29 136.0 98 67.3
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 2.1e-28 131.7 86 77.9
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.7e-25 122.1 131 51.9
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.6e-20 105.5 68 82.4
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.6e-20 104.4 68 80.9
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.4e-19 102.4 82 68.3
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 2.0e-18 98.6 55 85.5
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 2.6e-18 98.2 54 85.2
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.4e-18 97.4 82 65.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 2.8e-17 94.7 96 58.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.2e-15 89.4 49 93.9
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 4.5e-15 87.4 49 91.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-14 84.7 201 33.8
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 3.2e-13 81.3 68 55.9
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 5.5e-13 80.5 94 53.2
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 8.0e-12 76.6 63 66.7
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 9.8e-10 69.7 105 42.9
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.8e-10 69.7 37 86.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.8e-09 68.2 70 57.1
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.3e-09 67.0 44 68.2
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.7e-06 58.9 40 65.0
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.2e-06 58.5 33 87.9
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 2.9e-06 58.2 33 93.9


User provided reference genes

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