Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 8.2e-85 317.4 206 100.0
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 2.2e-74 282.7 206 82.5
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 3.8e-74 282.0 206 86.4
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 6.5e-74 281.2 207 85.0
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 8.5e-74 280.8 203 90.1
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 8.5e-74 280.8 203 90.1
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 8.5e-74 280.8 206 88.3
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.4e-73 280.0 203 89.2
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.4e-73 280.0 205 83.9
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.9e-73 279.6 200 90.5
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 7.2e-73 277.7 206 87.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 7.2e-73 277.7 206 87.9
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 9.3e-73 277.3 206 81.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 9.3e-73 277.3 206 85.4
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.2e-72 276.9 206 81.6
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.6e-72 276.6 203 89.7
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 2.7e-72 275.8 206 85.9
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.6e-72 275.4 206 84.5
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 3.6e-72 275.4 203 88.7
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 6.1e-72 274.6 205 84.4
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 6.1e-72 274.6 207 82.1
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 7.9e-72 274.2 206 86.4
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.0e-71 273.9 206 81.1
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.0e-71 273.9 206 81.1
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.3e-71 273.5 205 87.3
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.8e-71 273.1 206 81.1
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.8e-71 273.1 207 82.6
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 2.3e-71 272.7 206 80.6
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 3.0e-71 272.3 206 82.0
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 3.0e-71 272.3 202 88.1
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 3.0e-71 272.3 202 88.6
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.7e-71 271.2 203 86.7
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.1e-70 270.4 207 81.6
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.1e-70 270.4 206 80.6
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.1e-70 270.4 206 81.6
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.9e-70 269.6 194 83.0
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.9e-70 269.6 207 81.6
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.9e-70 269.6 206 81.1
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.5e-70 269.2 204 82.8
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 2.5e-70 269.2 196 90.8
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.5e-70 269.2 196 90.8
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.3e-70 268.9 195 93.3
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 4.3e-70 268.5 206 86.4
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 4.3e-70 268.5 206 80.1
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.3e-69 266.9 204 89.2
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.2e-69 266.2 205 80.0
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.2e-69 266.2 203 79.3
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.2e-69 266.2 197 80.7
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 2.2e-69 266.2 202 89.6
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.2e-69 266.2 206 85.9
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 2.8e-69 265.8 201 83.6
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 2.8e-69 265.8 207 79.2
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.7e-69 265.4 203 88.7
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 4.8e-69 265.0 205 82.0
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 4.8e-69 265.0 202 81.7
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.3e-69 264.6 202 83.2
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 8.2e-69 264.2 202 81.7
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.1e-68 263.8 203 82.3
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.8e-68 263.1 194 79.4
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.8e-68 263.1 194 80.9
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.8e-68 263.1 197 87.8
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.4e-68 262.7 200 81.0
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 3.1e-68 262.3 194 86.1
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 83.1
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 6.9e-68 261.2 194 79.4
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 9.1e-68 260.8 204 80.9
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 9.1e-68 260.8 197 86.3
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 9.1e-68 260.8 197 86.3
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 9.1e-68 260.8 201 80.6
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 9.1e-68 260.8 201 75.6
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.6e-67 259.2 206 78.2
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 3.4e-67 258.8 194 85.1
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 4.5e-67 258.5 207 80.2
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 4.5e-67 258.5 194 84.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 4.5e-67 258.5 195 82.6
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.3e-66 256.9 201 83.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.2e-66 256.1 200 83.5
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.8e-66 255.4 209 77.5
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.0e-66 255.0 209 77.5
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 6.5e-66 254.6 197 81.2
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 8.5e-66 254.2 206 78.6
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.1e-65 253.8 209 77.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.1e-65 253.8 206 77.2
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.1e-65 253.8 206 77.2
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.4e-65 253.4 195 82.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-65 253.1 197 84.8
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.5e-65 252.7 207 78.7
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.5e-65 252.7 206 76.7
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.7e-64 249.2 207 79.2
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 3.6e-64 248.8 206 75.2
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 4.6e-64 248.4 206 75.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 6.1e-64 248.1 207 78.7
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.4e-63 246.9 209 76.1
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.8e-63 246.5 238 67.6
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 3.0e-63 245.7 154 88.3
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 207 71.5
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 8.8e-63 244.2 159 94.3
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 3.3e-62 242.3 203 81.3
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.4e-60 236.1 196 83.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 3.1e-60 235.7 199 73.9
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 4.1e-60 235.3 206 74.3
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 6.9e-60 234.6 212 59.4
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.5e-59 233.4 200 76.0
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 3.4e-59 232.3 274 58.4
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.5e-59 231.9 150 78.7
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-58 230.3 159 88.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.7e-58 229.9 201 71.1
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 6.3e-53 211.5 294 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.9e-51 204.9 146 69.2
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.3e-50 203.8 206 67.0
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.2e-49 198.0 143 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.7e-48 195.3 139 71.2
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.0e-47 194.1 105 88.6
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.0e-47 194.1 202 58.9
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.3e-47 193.0 198 67.7
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 3.0e-47 192.6 206 55.8
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.2e-45 186.4 219 70.8
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.8e-45 186.0 205 59.5
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.4e-44 183.7 150 79.3
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.6e-40 170.2 146 65.1
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 2.7e-40 169.5 223 52.9
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.7e-38 161.8 123 86.2
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 3.7e-37 159.1 146 58.9
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.5e-35 152.5 126 65.9
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.5e-35 152.1 287 53.7
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.0e-34 148.7 212 59.0
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 3.6e-32 142.5 203 46.8
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.8e-31 140.2 240 48.8
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.6e-22 109.8 157 42.0
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.6e-22 109.8 214 43.0
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 6.6e-18 95.1 96 76.0
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 4.7e-16 89.0 91 76.9
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 4.4e-14 82.4 202 35.6
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 4.6e-11 72.4 46 78.3
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 4.3e-09 65.9 172 26.2


User provided reference genes

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