Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 2604.3 1276 100.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 2066.6 1274 77.7
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 2050.0 1274 79.0
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 2040.8 1274 78.3
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 2026.9 1275 76.5
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 2020.0 1275 76.8
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 2015.4 1275 76.3
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 2004.2 1275 75.5
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1996.9 1275 75.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1996.9 1273 76.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1993.8 1276 75.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1991.1 1275 75.1
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1986.8 1274 75.5
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1976.1 1276 75.5
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1975.7 1276 75.5
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1974.5 1276 75.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1969.5 1277 75.3
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1962.2 1302 74.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1959.1 1275 75.0
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1947.9 1276 74.4
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1947.6 1275 74.2
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1941.4 1274 72.9
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1941.0 1281 74.1
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1934.8 1275 72.2
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1933.7 1277 72.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1932.9 1277 72.4
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1928.7 1239 76.8
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1921.7 1273 72.4
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1909.4 1276 71.2
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1906.7 1277 71.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1904.4 1275 72.9
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1904.0 1287 71.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1897.9 1273 71.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1896.7 1274 72.4
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1892.9 1275 71.1
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1892.1 1273 72.1
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1888.2 1274 70.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1888.2 1274 70.3
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1884.0 1275 71.1
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1864.7 1278 70.6
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1862.8 1274 71.0
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1858.6 1272 70.6
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1857.4 1274 70.6
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1855.9 1274 70.9
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1845.5 1274 70.3
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1841.6 1274 69.9
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1822.8 1277 70.1
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1818.1 1243 71.6
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1812.7 1276 70.2
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1811.6 1288 68.6
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1810.0 1281 70.1
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1805.0 1274 69.4
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1804.6 1354 64.5
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1802.3 1272 69.7
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1792.7 1271 68.8
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1782.3 1374 64.3
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1780.4 1271 68.8
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1771.5 1275 68.2
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1765.0 1279 67.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1763.8 1278 67.4
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1756.1 1275 67.1
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1755.7 1280 66.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1755.7 1274 66.6
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1748.4 1277 67.0
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1741.1 1276 65.5
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1740.3 1276 66.8
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1736.9 1278 65.3
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1736.5 1274 66.6
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1736.1 1278 66.3
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1731.1 1274 65.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1721.4 1277 65.8
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1719.9 1281 66.0
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1719.9 1276 65.7
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1719.1 1283 66.3
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1714.9 1283 66.0
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1712.6 1289 65.9
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1708.7 1285 66.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1291 65.7
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1696.4 1275 65.3
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1693.7 1368 61.9
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1688.3 1223 67.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1685.6 1200 70.1
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1670.2 1179 69.3
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1669.1 1033 79.2
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1666.0 1291 63.1
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1664.8 1269 64.2
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1631.3 1274 64.1
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1628.2 1041 75.5
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1557.7 1043 72.9
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1517.7 1277 58.3
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1509.6 1049 71.0
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1477.2 1273 57.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1469.5 1274 59.7
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1443.3 1271 57.0
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1392.9 1275 57.9
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1325.1 939 69.9
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1322.4 1181 57.3
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1315.8 1227 54.1
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1258.8 808 78.0
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1256.5 940 68.2
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1229.5 831 71.0
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1220.3 876 66.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1218.4 828 70.8
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1193.3 940 65.7
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1184.9 832 68.5
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1145.2 1243 50.0
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1132.9 760 71.3
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1132.1 1323 47.4
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1128.6 1325 47.1
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1128.6 1194 49.7
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1105.5 777 68.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1104.7 1339 46.5
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1103.6 690 77.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 3.0e-310 1068.9 760 68.9
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.8e-299 1033.1 1155 49.0
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 6.1e-247 858.6 551 75.1
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.1e-235 821.2 1458 36.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.0e-233 814.7 623 64.5
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.2e-233 813.5 500 79.8
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.1e-215 752.3 613 57.4
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.3e-196 691.4 468 72.9
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.7e-191 672.9 501 63.7
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 6.7e-137 493.0 395 64.6
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 2.6e-136 491.1 320 73.8
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 9.1e-134 482.6 365 67.1
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 4.8e-127 460.3 333 67.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 5.9e-101 373.6 1343 27.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.1e-89 334.7 1227 25.9
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 6.0e-85 320.5 265 59.6
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.7e-47 196.1 147 63.9
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.8e-47 194.9 269 44.6
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 4.9e-47 194.5 156 64.1
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 2.5e-27 129.0 101 62.4
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.8e-25 122.9 78 69.2
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 3.8e-15 88.6 68 60.3
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 4.2e-14 85.1 46 87.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.9e-12 78.6 106 39.6
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 9.7e-11 73.9 50 66.0
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.3e-10 73.6 53 66.0
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 2.8e-10 72.4 143 33.6
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 3.7e-10 72.0 53 64.2
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 6.3e-10 71.2 138 34.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.1e-09 70.5 146 30.1
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.4e-09 70.1 66 56.1
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.2e-08 67.0 95 38.9
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.6e-08 66.6 56 55.4
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 4.5e-08 65.1 120 30.0
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.3e-07 63.5 48 62.5
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.3e-07 63.5 118 35.6
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-07 62.8 48 60.4
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-07 62.8 48 60.4
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 2.2e-07 62.8 48 60.4
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 2.2e-07 62.8 48 60.4
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 2.2e-07 62.8 48 60.4
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.2e-07 62.8 80 45.0
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 3.8e-07 62.0 48 60.4
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 5.0e-07 61.6 48 60.4
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 5.0e-07 61.6 48 60.4
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 8.5e-07 60.8 60 46.7
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 8.5e-07 60.8 118 33.9
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.9e-06 59.7 179 30.7
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 1.9e-06 59.7 118 33.9


User provided reference genes

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