Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 0.0e+00 1358.6 698 100.0
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 0.0e+00 1176.8 726 85.3
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 0.0e+00 1169.1 725 85.0
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 0.0e+00 1166.4 726 84.7
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 0.0e+00 1151.3 798 78.2
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 0.0e+00 1087.8 726 79.6
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 3.6e-278 961.4 695 71.5
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 1.6e-270 936.0 717 69.0
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 9.0e-269 930.2 700 68.7
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 3.3e-263 911.8 705 67.2
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 1.4e-261 906.4 703 67.9
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 8.4e-259 897.1 703 67.3
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 2.7e-257 892.1 720 66.5
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 4.6e-257 891.3 695 68.5
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 9.7e-255 883.6 698 67.2
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 1.2e-252 876.7 709 66.1
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 2.0e-252 875.9 729 63.5
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 1.0e-251 873.6 730 63.6
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 2.9e-251 872.1 733 64.3
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 3.8e-251 871.7 708 64.7
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 1.1e-250 870.2 716 64.5
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 1.9e-250 869.4 733 64.0
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 5.5e-250 867.8 686 65.7
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 1.2e-249 866.7 735 63.9
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 4.6e-249 864.8 706 65.0
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 1.4e-248 863.2 719 64.4
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 1.8e-248 862.8 693 65.8
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 2.3e-248 862.4 698 65.3
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 3.0e-248 862.1 719 64.3
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 5.1e-248 861.3 719 64.3
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 6.7e-248 860.9 678 66.7
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 6.7e-248 860.9 707 64.1
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 1.1e-247 860.1 683 65.9
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.1e-247 860.1 683 65.9
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 1.1e-247 860.1 684 66.1
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 1.5e-247 859.8 655 69.2
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 1.7e-246 856.3 715 63.8
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 3.7e-246 855.1 716 63.0
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 8.2e-246 854.0 679 66.0
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 4.1e-245 851.7 716 63.7
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 5.3e-245 851.3 698 64.5
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 6.9e-245 850.9 690 65.4
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.2e-244 850.1 686 65.7
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 3.4e-244 848.6 698 64.3
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 5.9e-244 847.8 657 68.5
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 5.0e-243 844.7 723 63.6
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.1e-242 843.6 682 66.0
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 1.1e-242 843.6 736 63.5
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 1.1e-242 843.6 713 64.4
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 1.1e-242 843.6 770 59.2
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 1.4e-242 843.2 690 64.9
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 1.9e-242 842.8 704 64.3
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 2.5e-242 842.4 743 61.9
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 7.9e-241 837.4 731 61.4
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 7.9e-241 837.4 754 61.5
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 1.0e-240 837.0 754 61.0
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 1.4e-240 836.6 699 64.2
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 1.8e-240 836.3 715 62.9
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 3.0e-240 835.5 700 64.9
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 8.8e-240 833.9 698 63.8
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 4.4e-239 831.6 724 62.3
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 1.7e-238 829.7 740 62.7
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 2.2e-238 829.3 743 61.4
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 4.8e-238 828.2 741 62.2
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 6.3e-238 827.8 673 64.5
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 1.1e-237 827.0 710 64.1
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 3.1e-237 825.5 691 64.1
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 4.1e-237 825.1 676 65.5
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 5.3e-237 824.7 725 62.3
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 9.1e-237 823.9 750 62.1
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 1.2e-236 823.5 742 62.1
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 2.0e-236 822.8 742 62.1
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 7.7e-236 820.8 690 63.8
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 1.3e-235 820.1 726 61.2
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 4.2e-234 815.1 737 61.2
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 8.0e-233 810.8 716 62.3
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.0e-231 806.2 691 61.8
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.2e-227 792.7 648 66.2
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 2.5e-226 789.3 761 57.7
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 2.7e-225 785.8 734 59.3
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 1.3e-222 776.9 634 66.1
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 1.7e-222 776.5 718 59.1
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 2.2e-222 776.2 695 60.6
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 5.3e-221 771.5 707 59.4
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 7.7e-220 767.7 519 79.0
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 1.7e-219 766.5 802 55.9
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 2.2e-219 766.1 695 59.7
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 2.2e-219 766.1 726 56.5
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 5.7e-215 751.5 618 62.9
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 7.7e-212 741.1 595 65.4
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 2.3e-203 713.0 767 54.4
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 2.5e-202 709.5 708 56.5
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.3e-202 709.1 686 57.7
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.2e-188 664.1 728 53.2
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 2.7e-172 609.8 478 66.7
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 5.8e-167 592.0 554 59.4
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 2.4e-165 586.6 505 64.4
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 5.1e-163 578.9 474 65.2
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.1e-162 577.8 748 47.7
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 5.4e-157 558.9 669 49.0
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 1.5e-154 550.8 541 58.4
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 3.0e-147 526.6 682 45.5
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 1.3e-142 511.1 487 58.3
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 9.7e-138 495.0 799 42.2
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 5.9e-135 485.7 468 56.6
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 6.7e-131 472.2 633 44.7
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 6.3e-129 465.7 527 49.9
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 5.7e-114 416.0 425 54.4
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.2e-90 338.6 418 49.3
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 5.2e-67 260.0 214 62.1
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 5.1e-62 243.4 284 50.7
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 9.6e-53 212.6 437 31.4
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 9.9e-42 176.0 316 33.2
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 1.7e-41 175.3 212 51.4
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 6.9e-27 126.7 272 35.3
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 1.5e-21 109.0 114 48.2
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 2.8e-20 104.8 74 68.9
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 8.5e-17 93.2 87 52.9
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-16 92.4 104 50.0
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-16 89.7 257 28.4
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 4.5e-10 70.9 41 87.8
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 2.9e-09 68.2 63 60.3
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 5.0e-09 67.4 38 89.5


User provided reference genes

Program Settings