Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 1.6e-222 775.8 385 100.0
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 8.4e-200 700.3 389 89.5
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.5e-196 689.5 389 87.7
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 2.5e-196 688.7 389 88.2
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.1e-187 659.1 387 84.2
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 3.1e-186 655.2 385 84.2
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 5.7e-156 554.7 378 72.8
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.8e-154 549.7 381 71.9
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 5.1e-149 531.6 373 69.4
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 3.3e-148 528.9 369 71.0
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 2.8e-147 525.8 378 70.9
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.1e-146 523.9 422 64.2
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.6e-145 519.2 377 68.7
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 7.7e-145 517.7 397 66.5
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 2.9e-144 515.8 377 69.5
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 6.5e-144 514.6 373 68.6
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 8.5e-144 514.2 368 68.5
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 8.5e-144 514.2 360 69.7
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.5e-143 512.7 368 69.8
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 5.5e-143 511.5 368 69.0
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 2.1e-142 509.6 373 68.9
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.7e-142 509.2 368 68.2
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 2.7e-142 509.2 368 69.0
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 3.6e-142 508.8 374 67.6
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 3.6e-142 508.8 366 68.9
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.1e-142 508.1 368 67.9
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 7.9e-142 507.7 362 69.6
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 1.8e-141 506.5 355 69.9
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 1.8e-141 506.5 400 66.5
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 8.8e-141 504.2 379 67.3
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.5e-140 503.4 375 66.4
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 2.0e-140 503.1 371 66.8
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 2.0e-140 503.1 373 67.6
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 3.3e-140 502.3 355 69.3
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 5.7e-140 501.5 348 72.1
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 3.7e-139 498.8 391 64.7
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 4.8e-139 498.4 366 69.1
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.1e-138 495.7 404 62.9
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 4.1e-138 495.4 387 66.7
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 4.5e-137 491.9 377 65.8
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 1.3e-136 490.3 381 65.1
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 3.8e-136 488.8 386 66.6
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 5.0e-136 488.4 384 65.1
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 6.5e-136 488.0 368 67.4
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 2.3e-133 479.6 372 65.6
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 6.7e-133 478.0 372 65.6
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 3.3e-132 475.7 384 63.5
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 5.7e-132 474.9 480 52.9
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 7.5e-132 474.6 371 64.2
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.8e-131 472.6 357 66.7
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 1.1e-130 470.7 377 63.7
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.4e-130 470.3 378 64.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 2.4e-130 469.5 375 63.7
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 2.4e-130 469.5 382 63.6
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 2.7e-129 466.1 368 64.1
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 3.5e-129 465.7 374 63.4
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 7.7e-129 464.5 329 70.2
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 7.7e-129 464.5 367 63.5
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.0e-128 464.2 381 62.2
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 2.2e-128 463.0 377 64.2
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 2.9e-128 462.6 325 69.5
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.9e-128 462.6 368 63.6
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 2.9e-128 462.6 383 62.9
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 3.8e-128 462.2 325 69.5
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 3.8e-128 462.2 360 65.6
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 5.0e-128 461.8 431 58.2
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 1.9e-127 459.9 368 65.5
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 5.5e-127 458.4 379 61.7
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 1.2e-126 457.2 325 69.2
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 1.6e-126 456.8 379 61.7
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 1.6e-126 456.8 358 66.8
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.6e-126 455.7 357 64.7
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 4.7e-126 455.3 358 64.2
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 6.1e-126 454.9 368 64.7
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 3.0e-125 452.6 361 64.3
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 4.0e-125 452.2 406 58.9
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 5.2e-125 451.8 383 61.1
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 6.8e-125 451.4 355 62.8
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 6.8e-125 451.4 355 64.5
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 1.2e-124 450.7 365 61.9
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.6e-124 449.5 355 62.5
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.8e-123 445.3 336 67.3
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 4.8e-123 445.3 372 62.6
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 7.0e-122 441.4 366 61.2
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 7.0e-122 441.4 386 60.9
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 2.7e-121 439.5 328 67.7
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 3.2e-119 432.6 362 63.0
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 7.2e-119 431.4 331 63.4
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.2e-118 430.6 331 62.8
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 3.0e-117 426.0 364 59.9
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 3.0e-117 426.0 364 59.9
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 1.5e-116 423.7 335 63.0
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 3.8e-112 409.1 332 63.0
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 4.3e-111 405.6 324 64.8
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 4.6e-105 385.6 318 62.9
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 2.3e-104 383.3 322 59.3
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.3e-99 367.5 387 53.5
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 2.9e-99 366.3 371 55.3
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 8.6e-96 354.8 256 66.0
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 8.9e-93 344.7 324 55.9
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.2e-92 344.4 276 64.5
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 6.0e-89 332.0 309 57.0
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 4.6e-81 305.8 457 41.6
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 2.1e-78 297.0 402 48.0
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 2.1e-78 297.0 186 74.2
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 1.2e-76 291.2 223 64.1
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 5.3e-69 265.8 180 73.3
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 1.9e-66 257.3 177 74.6
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 9.6e-63 245.0 197 62.9
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 4.8e-54 216.1 436 36.7
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 7.1e-50 202.2 141 69.5
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 9.4e-34 148.7 141 58.9
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.6e-33 147.9 79 86.1
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 7.0e-21 105.9 324 27.5
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 7.0e-21 105.9 333 25.8
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 4.5e-20 103.2 332 26.5
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.1e-18 98.6 349 28.4
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.2e-17 95.1 346 27.5
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 8.0e-17 92.4 332 25.3
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 8.0e-17 92.4 201 31.8
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 3.0e-16 90.5 334 26.0
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 5.2e-16 89.7 335 26.3
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 2.6e-15 87.4 214 29.9
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 4.4e-15 86.7 195 31.3
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 5.7e-15 86.3 182 30.2
CSS0037344 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 7.5e-15 85.9 202 26.7
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 9.7e-15 85.5 195 30.3
CSS0031150 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.7e-14 84.7 202 26.7
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 2.8e-14 84.0 198 30.3
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 2.8e-14 84.0 220 27.3
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 2.8e-14 84.0 209 28.2
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 4.8e-14 83.2 195 30.3
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 6.3e-14 82.8 203 29.1
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 6.3e-14 82.8 198 29.3
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 8.2e-14 82.4 362 25.1
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 8.2e-14 82.4 196 28.1
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 1.1e-13 82.0 187 31.6
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 1.1e-13 82.0 331 26.3
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 1.1e-13 82.0 195 30.3
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 1.4e-13 81.6 197 31.5
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 1.8e-13 81.3 172 30.8
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 1.8e-13 81.3 328 24.7
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 2.4e-13 80.9 184 31.5
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 2.4e-13 80.9 226 25.7
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 3.1e-13 80.5 198 30.3
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 4.1e-13 80.1 340 25.9
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 4.1e-13 80.1 174 29.9
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 4.1e-13 80.1 198 28.8
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 5.3e-13 79.7 231 27.7
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 7.0e-13 79.3 191 31.4
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 9.1e-13 79.0 174 29.9
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 9.1e-13 79.0 331 24.5
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 1.2e-12 78.6 176 29.5
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 1.2e-12 78.6 176 29.5
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 1.2e-12 78.6 198 28.3
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 1.2e-12 78.6 198 28.3
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.2e-12 78.6 174 29.9
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 1.2e-12 78.6 172 29.7
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.2e-12 78.6 198 28.8
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 2.7e-12 77.4 204 27.0
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 2.7e-12 77.4 174 29.9
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 1.0e-11 75.5 187 29.9
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 1.0e-11 75.5 198 26.8
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.7e-11 74.7 204 31.9
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 1.1e-10 72.0 51 70.6
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 3.2e-10 70.5 377 24.7
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 5.5e-10 69.7 392 25.8
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 7.2e-10 69.3 385 24.9
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 7.2e-10 69.3 389 24.9
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.2e-09 68.6 177 28.2
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 3.6e-09 67.0 352 22.2
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 4.7e-09 66.6 181 29.3
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 1.8e-08 64.7 330 25.5
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 1.8e-08 64.7 290 24.8
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 1.3e-06 58.5 96 30.2
Glyma.10G220000 Glycine max HOM05D005655 ORTHO05D007386 2.2e-06 57.8 239 28.9
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.8e-06 57.4 74 36.5
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 2.8e-06 57.4 137 29.9
PRCOL_00002466 Prasinoderma coloniale HOM05D005655 ORTHO05D007386 6.3e-06 56.2 218 28.4


User provided reference genes

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