Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G742.26 Capsicum annuum HOM05D004526 ORTHO05D005548 6.7e-60 233.8 117 100.0
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 3.8e-39 164.9 123 69.1
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 1.1e-38 163.3 123 69.1
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 1.1e-38 163.3 123 70.7
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 1.9e-38 162.5 123 70.7
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 2.5e-38 162.2 123 70.7
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 2.5e-38 162.2 123 70.7
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 4.2e-38 161.4 123 69.9
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 5.5e-38 161.0 123 68.3
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 7.2e-38 160.6 123 66.7
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 9.5e-38 160.2 123 65.9
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 9.5e-38 160.2 123 67.5
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 1.2e-37 159.8 123 68.3
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 2.8e-37 158.7 125 64.0
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 2.8e-37 158.7 122 69.7
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 2.8e-37 158.7 123 65.0
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 4.7e-37 157.9 123 66.7
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 4.7e-37 157.9 123 65.0
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 4.7e-37 157.9 123 65.0
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 4.7e-37 157.9 123 65.0
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 4.7e-37 157.9 123 65.0
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 4.7e-37 157.9 123 65.0
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 8.0e-37 157.1 126 65.9
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 8.0e-37 157.1 123 64.2
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 8.0e-37 157.1 125 63.2
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 8.0e-37 157.1 125 63.2
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.0e-36 156.8 123 66.7
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 1.0e-36 156.8 123 64.2
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 1.0e-36 156.8 123 69.9
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 1.4e-36 156.4 123 66.7
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 1.4e-36 156.4 123 66.7
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 1.8e-36 156.0 123 65.9
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 2.3e-36 155.6 123 65.0
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 3.0e-36 155.2 123 65.9
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 6.8e-36 154.1 123 62.6
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 8.9e-36 153.7 123 64.2
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 8.9e-36 153.7 123 64.2
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 8.9e-36 153.7 123 64.2
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 1.2e-35 153.3 123 63.4
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 1.2e-35 153.3 123 63.4
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 2.0e-35 152.5 123 63.4
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 2.0e-35 152.5 123 63.4
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 2.0e-35 152.5 123 63.4
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 3.4e-35 151.8 123 63.4
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 3.4e-35 151.8 123 63.4
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 3.4e-35 151.8 123 63.4
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 4.4e-35 151.4 123 62.6
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 4.4e-35 151.4 123 62.6
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 5.7e-35 151.0 123 64.2
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 5.7e-35 151.0 123 61.8
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 7.5e-35 150.6 123 63.4
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 7.5e-35 150.6 125 63.2
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 9.8e-35 150.2 123 63.4
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 1.3e-34 149.8 123 61.0
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 1.7e-34 149.4 123 63.4
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 1.7e-34 149.4 123 61.8
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 2.2e-34 149.1 123 61.0
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 2.2e-34 149.1 123 60.2
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 2.2e-34 149.1 123 63.4
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 2.8e-34 148.7 123 61.0
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 2.8e-34 148.7 123 61.8
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 3.7e-34 148.3 123 62.6
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 3.7e-34 148.3 123 61.8
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 4.9e-34 147.9 123 61.8
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 6.3e-34 147.5 123 62.6
AUR62031643 Chenopodium quinoa HOM05D004526 ORTHO05D005548 6.3e-34 147.5 126 59.5
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 6.3e-34 147.5 125 63.2
TPR.G10385 Trifolium pratense HOM05D004526 ORTHO05D005548 6.3e-34 147.5 123 60.2
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 8.3e-34 147.1 123 61.8
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 1.1e-33 146.7 123 61.0
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 1.1e-33 146.7 123 61.0
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.1e-33 146.7 123 61.0
Cfa007708 Carpinus fangiana HOM05D004526 ORTHO05D005548 1.8e-33 146.0 123 61.0
AUR62038875 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.8e-33 146.0 126 58.7
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 1.8e-33 146.0 123 61.0
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 1.8e-33 146.0 123 61.0
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 3.1e-33 145.2 123 60.2
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 4.1e-33 144.8 123 59.3
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 4.1e-33 144.8 123 61.8
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 4.1e-33 144.8 123 61.0
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 5.4e-33 144.4 123 59.3
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 9.2e-33 143.7 124 61.3
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 9.2e-33 143.7 125 62.4
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 1.2e-32 143.3 123 59.3
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 1.2e-32 143.3 125 62.4
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 2.0e-32 142.5 149 52.3
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 2.7e-32 142.1 123 58.5
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 5.9e-32 141.0 123 57.7
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 5.9e-32 141.0 123 61.0
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 1.7e-31 139.4 124 60.5
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 2.9e-31 138.7 123 56.1
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 2.5e-30 135.6 124 58.1
Pp3c21_6910 Physcomitrium patens HOM05D004526 ORTHO05D005548 4.3e-30 134.8 123 55.3
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 9.5e-30 133.7 134 54.5
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 2.8e-29 132.1 124 58.1
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 2.8e-29 132.1 123 54.5
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 4.7e-29 131.3 123 56.9
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 8.0e-29 130.6 123 57.7
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 1.4e-28 129.8 123 52.8
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 3.0e-28 128.6 123 54.5
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 5.2e-28 127.9 124 54.8
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 8.9e-28 127.1 123 56.9
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 1.2e-27 126.7 124 53.2
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 1.2e-27 126.7 124 53.2
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 1.2e-27 126.7 124 53.2
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 1.2e-27 126.7 124 53.2
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 2.6e-27 125.6 124 52.4
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 2.6e-27 125.6 124 52.4
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 7.5e-27 124.0 123 52.8
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 2.9e-26 122.1 124 52.4
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 2.9e-26 122.1 148 46.6
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 8.3e-26 120.6 123 50.4
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.9e-25 119.4 124 54.0
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 1.9e-25 119.4 124 54.0
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 2.4e-25 119.0 124 50.8
AUR62010753 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.6e-24 116.3 123 52.8
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.7e-23 112.8 125 48.8
C06p02960 Brassica napus HOM05D004526 ORTHO05D005548 3.3e-22 108.6 127 45.7
BolC6t35419H Brassica oleracea HOM05D004526 ORTHO05D005548 3.3e-22 108.6 127 45.7
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 2.8e-21 105.5 119 47.9
BcaB07g33761 Brassica carinata HOM05D004526 ORTHO05D005548 1.1e-20 103.6 114 48.2
BcaC08g43036 Brassica carinata HOM05D004526 ORTHO05D005548 8.9e-20 100.5 127 44.9
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 2.6e-19 99.0 123 43.9
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 1.4e-17 93.2 123 39.8
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 2.1e-16 89.4 91 52.7
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 4.6e-16 88.2 82 57.3
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 2.8e-13 79.0 121 35.5
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 2.3e-12 75.9 121 38.0
Cre03.g194800 Chlamydomonas reinhardtii HOM05D004526 ORTHO05D005548 9.9e-11 70.5 126 35.7
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 6.4e-10 67.8 114 32.5
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 1.1e-09 67.0 120 27.5
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 2.4e-09 65.9 111 30.6
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 5.4e-09 64.7 120 26.7
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 5.4e-09 64.7 120 26.7
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 5.4e-09 64.7 120 26.7
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 5.4e-09 64.7 120 26.7
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 1.2e-08 63.5 120 28.3
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 1.0e-07 60.5 101 35.6
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 5.1e-07 58.2 122 28.7
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 1.1e-06 57.0 125 26.4


User provided reference genes

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