Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 2.7e-177 625.2 306 100.0
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.7e-123 446.4 289 76.5
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.6e-108 396.7 320 65.6
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.3e-104 382.9 268 72.0
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.7e-84 316.2 182 83.5
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 3.5e-84 315.8 215 74.9
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.5e-74 283.9 191 74.3
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.7e-73 279.3 305 50.5
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.2e-70 270.0 298 50.3
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.9e-62 243.0 272 47.1
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 6.7e-59 231.9 286 45.1
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.1e-56 224.6 288 44.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 2.9e-54 216.5 294 42.2
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.2e-52 211.1 279 44.8
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.6e-52 210.7 257 44.4
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.1e-50 204.5 289 41.5
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.5e-50 204.1 282 41.8
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.3e-50 203.0 326 37.1
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.2e-47 194.5 317 37.9
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 7.7e-47 191.8 257 40.9
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.2e-45 186.0 253 43.5
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 3.9e-43 179.5 292 36.6
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 4.4e-42 176.0 303 35.3
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 9.7e-42 174.9 252 36.1
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 8.2e-41 171.8 310 37.1
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 2.4e-40 170.2 238 42.4
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 5.9e-39 165.6 277 36.5
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.0e-38 162.5 268 37.7
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.9e-37 160.6 233 39.9
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 5.5e-37 159.1 272 34.2
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 8.0e-36 155.2 271 38.0
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 3.0e-35 153.3 276 35.5
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.4e-34 149.4 276 34.8
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.8e-33 146.7 262 37.4
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 2.4e-32 143.7 282 35.1
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 5.3e-32 142.5 264 36.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.6e-31 141.0 291 34.7
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.5e-31 139.8 291 33.7
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.7e-30 137.5 280 33.2
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 2.2e-30 137.1 294 33.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.8e-30 136.3 266 35.3
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.1e-29 134.8 270 33.7
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.9e-29 134.0 300 29.7
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 3.2e-29 133.3 305 30.8
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 7.2e-29 132.1 264 35.6
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 9.4e-29 131.7 253 32.8
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-28 130.2 244 36.1
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.4e-27 127.9 316 31.0
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.4e-27 127.9 316 31.0
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 5.2e-27 125.9 111 53.2
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-26 124.8 317 31.5
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-26 124.8 317 31.5
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.2e-26 124.8 248 30.6
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.6e-26 123.6 284 33.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.6e-26 123.6 296 29.4
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 7.5e-26 122.1 244 32.8
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.7e-25 120.9 292 29.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.7e-25 120.9 253 30.4
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 4.8e-25 119.4 242 32.6
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 8.3e-25 118.6 290 30.3
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 8.3e-25 118.6 284 31.3
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.8e-24 117.5 294 29.3
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 2.4e-24 117.1 149 47.0
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.4e-24 117.1 248 31.5
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.4e-24 117.1 248 31.5
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 2.4e-24 117.1 244 30.3
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 4.1e-24 116.3 294 31.3
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 5.4e-24 115.9 242 31.8
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 9.1e-24 115.2 122 49.2
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-23 114.8 242 30.6
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.2e-23 114.8 293 28.0
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 1.6e-23 114.4 244 30.7
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 2.0e-23 114.0 242 31.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.7e-23 113.6 242 31.0
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.7e-23 113.6 128 48.4
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.7e-23 113.6 284 31.0
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.5e-23 113.2 283 31.4
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 5.9e-23 112.5 295 29.5
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 7.7e-23 112.1 242 31.4
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 6.5e-22 109.0 242 31.4
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 8.5e-22 108.6 242 31.4
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.9e-21 107.5 332 30.1
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 9.4e-21 105.1 270 30.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 8.0e-20 102.1 317 29.0
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.4e-19 101.3 153 39.2
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 3.0e-19 100.1 156 38.5
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 6.8e-19 99.0 246 31.3
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 1.5e-18 97.8 157 40.1
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-18 97.4 321 27.4
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 4.1e-16 89.7 98 50.0
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.6e-15 87.8 207 30.0
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 3.5e-15 86.7 159 36.5
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.9e-14 83.6 259 29.0
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 5.0e-14 82.8 160 32.5
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 5.0e-14 82.8 239 29.7
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.9e-13 80.9 254 27.2
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 3.3e-13 80.1 150 34.0
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 4.2e-13 79.7 213 28.6
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.5e-13 79.3 198 27.3
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 5.5e-13 79.3 147 32.0
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 7.2e-13 79.0 150 34.0
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 7.2e-13 79.0 258 28.3
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.2e-12 78.2 173 31.2
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.8e-12 77.0 157 32.5
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.1e-12 75.9 330 25.5
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-11 75.1 156 34.0
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.0e-11 75.1 139 32.4
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 1.0e-11 75.1 151 34.4
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.4e-11 74.7 145 33.8
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.4e-11 74.7 145 33.8
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 2.3e-11 73.9 186 31.2
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 3.0e-11 73.6 145 33.8
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 3.0e-11 73.6 150 32.7
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 4.0e-11 73.2 139 32.4
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 5.2e-11 72.8 138 31.2
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.2e-11 72.8 145 33.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 6.8e-11 72.4 143 32.2
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 8.9e-11 72.0 136 32.4
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 8.9e-11 72.0 200 28.0
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.2e-10 71.6 139 28.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.2e-10 71.6 134 32.8
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.5e-10 71.2 141 30.5
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 2.0e-10 70.9 216 24.1
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.6e-10 70.5 143 28.7
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 3.4e-10 70.1 149 31.5
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 3.4e-10 70.1 145 29.0
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 4.4e-10 69.7 136 33.1
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-09 68.2 149 33.6
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.3e-09 68.2 149 33.6
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.3e-09 68.2 149 33.6
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.3e-09 68.2 145 30.3
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.7e-09 67.8 145 31.7
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 2.2e-09 67.4 186 27.4
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 2.9e-09 67.0 149 31.5
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 2.9e-09 67.0 145 31.0
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 2.9e-09 67.0 149 31.5
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 3.7e-09 66.6 145 26.9
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 4.9e-09 66.2 47 61.7
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 4.9e-09 66.2 47 61.7
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 6.3e-09 65.9 139 27.3
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 6.3e-09 65.9 241 26.6
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 8.3e-09 65.5 145 33.1
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 8.3e-09 65.5 140 30.0
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 8.3e-09 65.5 210 26.7
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.1e-08 65.1 142 29.6
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.8e-08 64.3 253 24.9
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.8e-08 64.3 143 30.8
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 2.4e-08 63.9 136 30.1
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 2.4e-08 63.9 143 30.1
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 2.4e-08 63.9 148 31.8
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.4e-08 63.9 159 29.6
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 3.2e-08 63.5 136 30.1
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.1e-08 63.2 141 31.2
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 4.1e-08 63.2 133 36.1
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 4.1e-08 63.2 133 36.1
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 7.0e-08 62.4 133 36.1
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 9.2e-08 62.0 70 44.3
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 9.2e-08 62.0 141 31.2
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-07 61.6 107 40.2
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.6e-07 61.2 178 30.3
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.6e-07 61.2 154 29.9
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 3.5e-07 60.1 145 29.7
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 5.9e-07 59.3 139 30.9
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 7.8e-07 58.9 159 31.4
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 7.8e-07 58.9 154 29.9
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.7e-06 57.8 63 52.4
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 3.9e-06 56.6 95 33.7


User provided reference genes

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