Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 3397.1 1784 100.0
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 3045.8 1781 89.8
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2903.2 1700 88.9
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2791.9 1702 86.8
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2585.4 1684 82.5
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 2539.6 1622 83.5
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2330.8 1716 70.8
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2299.6 1801 68.6
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2298.1 1741 69.7
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2230.7 1800 65.6
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2208.7 1785 65.0
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2201.8 1787 65.5
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2199.5 1819 64.5
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2188.3 1804 64.8
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2184.8 1749 66.7
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2183.7 1814 65.3
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2167.1 1812 65.0
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2159.0 1745 65.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2145.5 1795 63.6
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2143.6 1821 62.9
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2135.9 1773 64.5
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2130.5 1789 64.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2130.1 1794 63.7
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2125.9 1865 61.7
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2124.7 1810 63.5
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2117.4 1876 62.3
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2111.3 1764 64.1
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2105.5 1739 63.4
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2098.6 1784 63.8
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2095.5 1815 61.7
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2093.9 1804 62.5
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2083.5 1817 62.3
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2082.0 1669 66.4
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2080.8 1808 62.5
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2079.3 1736 63.4
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2077.0 1806 62.3
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2071.6 1800 62.6
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2065.4 1767 63.0
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2054.6 1765 62.8
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2052.7 1756 62.7
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2050.4 1799 62.1
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2048.9 1768 62.4
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2048.9 1767 62.7
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2040.4 1778 61.0
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2038.1 1780 61.6
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2037.7 1815 60.8
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2032.7 1764 62.0
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2029.6 1869 59.4
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2026.1 1731 61.8
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2017.3 1822 60.4
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2006.1 1763 61.8
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2005.7 1760 61.5
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2003.4 1819 60.6
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1996.1 1765 61.6
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1996.1 1819 60.2
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1986.8 1809 59.8
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1981.5 1741 61.1
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1969.1 1515 70.0
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1968.7 1763 60.1
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1968.4 1797 59.6
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1963.0 1644 63.7
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1960.7 1666 62.8
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1956.4 1796 58.4
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1942.9 1836 58.2
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1908.3 1802 57.3
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1907.5 1803 57.5
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1899.4 1811 56.3
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1897.1 1700 60.5
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1891.7 1741 59.3
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1889.0 1766 58.4
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1886.3 1807 56.3
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1880.9 1793 56.3
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1880.9 1793 56.3
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1874.4 1819 56.9
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1873.2 1823 58.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1867.0 1790 56.3
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1867.0 1790 56.3
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1865.5 1806 55.9
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1862.4 1817 56.0
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1858.2 1813 55.6
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1853.6 1816 55.9
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1853.2 1515 65.0
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1837.4 1823 56.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1828.9 1869 54.9
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1827.4 1538 63.8
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1820.8 1459 66.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1816.2 1488 64.2
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1763.0 1858 54.5
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1707.6 1699 56.1
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1630.9 1485 58.7
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1609.3 1353 63.8
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1581.2 1775 51.4
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1541.6 1596 54.2
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1436.8 1801 46.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1436.4 1381 57.1
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1338.9 1773 45.0
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1318.9 1207 61.0
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1318.9 1729 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1308.5 1746 43.8
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1266.1 982 71.6
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1130.9 1004 60.8
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.4e-297 1027.3 931 60.0
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.2e-294 1016.1 1074 51.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 3.1e-281 973.0 904 59.3
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.4e-278 964.1 1517 39.2
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 5.3e-241 839.3 786 58.3
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 3.5e-240 836.6 647 66.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 2.5e-230 803.9 475 86.3
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.7e-218 764.6 660 62.3
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.7e-186 658.3 890 44.4
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.8e-173 614.4 497 65.2
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 3.8e-154 550.8 510 58.4
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.6e-152 544.3 734 43.3
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 6.1e-144 516.9 484 59.5
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 2.3e-135 488.4 562 51.4
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 1.1e-134 486.1 433 59.4
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.7e-133 482.3 504 52.8
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 4.4e-126 457.6 436 57.1
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.1e-116 426.4 452 54.4
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.3e-111 408.7 417 54.0
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.5e-99 368.2 372 56.5
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.0e-96 357.1 357 54.6
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.3e-93 349.7 282 61.7
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.9e-92 345.9 327 55.4
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 2.4e-92 345.5 297 62.6
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 2.7e-91 342.0 425 47.8
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 8.9e-79 300.4 313 55.6
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 4.9e-77 294.7 1555 24.1
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 2.3e-58 232.6 281 48.8
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.9e-57 229.6 117 94.9
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.0e-45 190.7 222 48.2
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 3.8e-45 188.7 120 73.3
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.2e-43 183.7 557 28.9
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.0e-42 179.1 174 54.6
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 6.5e-37 161.4 165 53.9
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.0e-34 152.5 417 31.2
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.8e-31 143.3 108 61.1
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 9.1e-31 141.0 254 40.6
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 9.4e-28 131.0 95 67.4
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 1.2e-27 130.6 70 90.0
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.7e-27 128.6 80 83.8
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 7.9e-27 127.9 83 83.1
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.3e-26 126.3 141 48.2
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.1e-25 124.0 75 85.3
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 9.7e-25 120.9 93 64.5
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.8e-24 119.4 101 63.4
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 8.2e-24 117.9 94 62.8
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.2e-22 114.0 78 69.2
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.5e-22 113.6 194 37.6
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 5.9e-22 111.7 87 66.7
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 1.3e-21 110.5 77 71.4
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.7e-21 110.2 78 69.2
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 5.5e-20 105.1 71 73.2
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 1.0e-18 100.9 104 50.0
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 7.4e-17 94.7 91 58.2
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 9.7e-17 94.4 174 33.9
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 4.8e-16 92.0 85 60.0
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.8e-16 92.0 68 70.6
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.8e-15 90.1 107 51.4
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 5.3e-15 88.6 107 50.5
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 3.5e-14 85.9 91 51.6
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.7e-13 83.6 61 67.2
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 3.2e-12 79.3 255 28.6
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 1.2e-11 77.4 73 53.4
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.7e-11 76.3 66 59.1
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.7e-11 76.3 66 59.1
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.0e-10 74.3 66 57.6
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 8.8e-10 71.2 154 29.9
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 1.5e-09 70.5 53 64.2
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 4.4e-09 68.9 111 36.9
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 4.8e-08 65.5 93 40.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 8.2e-08 64.7 106 38.7


User provided reference genes

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