Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1878.6 955 100.0
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1822.4 955 96.8
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1820.8 955 95.5
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1815.4 955 94.9
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1787.3 955 93.8
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1763.4 955 92.6
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1726.5 953 92.4
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1619.0 966 82.7
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1601.3 954 82.7
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1595.5 957 82.1
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1580.5 958 81.3
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1578.5 958 81.2
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 955 81.8
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1573.1 959 80.7
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 958 80.7
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1567.4 962 80.9
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 964 80.7
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1566.6 939 82.2
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1564.3 951 80.9
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1563.1 961 81.2
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 966 80.8
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 965 79.1
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 962 80.0
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 962 80.0
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 958 80.9
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1556.2 961 79.9
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1555.4 965 79.9
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 958 79.9
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1550.0 961 79.2
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1549.3 955 80.6
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 948 80.2
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 948 80.1
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1547.3 950 80.1
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 955 79.8
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1546.2 955 80.4
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1545.8 937 81.4
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 945 80.3
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 952 79.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1541.2 956 80.1
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 961 79.5
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 942 80.4
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1538.9 957 79.1
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1536.5 961 80.0
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 948 79.5
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 952 79.4
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1532.7 942 81.0
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1532.7 952 79.4
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1530.0 965 78.8
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 965 78.5
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 945 79.5
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1526.5 961 78.0
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 972 77.9
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1523.8 956 79.3
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 953 78.9
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 960 79.1
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 964 78.3
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1521.1 963 78.1
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1520.0 972 77.9
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1515.0 972 77.2
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 968 77.6
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 971 77.8
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1513.4 969 78.9
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1509.2 972 77.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 959 78.4
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1505.0 967 77.1
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 967 77.1
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 971 77.0
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 964 78.2
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 947 78.0
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 954 77.4
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 971 76.6
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1496.5 964 77.8
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1494.6 956 77.4
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1492.6 964 77.1
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1488.0 1002 74.8
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 943 77.1
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 940 76.7
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 940 77.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 940 77.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 940 76.7
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 956 77.0
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 945 76.7
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 972 75.2
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 940 76.7
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 940 76.4
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 940 76.7
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 940 76.9
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 940 76.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 956 76.8
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 963 75.2
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 963 75.3
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1471.4 958 76.3
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1466.4 943 76.5
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1466.1 939 76.5
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 960 76.5
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 965 75.6
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1458.7 976 74.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 956 75.0
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1442.6 969 75.5
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1436.8 952 75.1
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1424.5 952 74.1
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1404.0 947 71.7
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1403.3 955 71.4
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1372.8 952 72.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1364.4 835 80.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1346.3 950 71.8
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1328.9 965 69.0
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1318.9 853 76.9
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1313.9 848 76.8
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1192.6 996 60.1
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1191.8 732 79.6
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1188.7 961 61.5
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1177.2 964 63.7
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1147.5 707 80.3
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1123.6 1023 55.8
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1083.2 938 59.8
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1080.1 665 80.6
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 7.8e-311 1070.5 646 81.9
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 8.0e-276 954.1 717 66.7
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 5.1e-222 775.4 769 51.9
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.9e-213 746.9 463 79.0
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.2e-180 635.2 441 71.7
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.7e-129 468.0 303 71.6
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.5e-109 401.7 644 39.4
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 3.4e-109 400.6 1091 27.5
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.9e-80 305.1 202 72.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.4e-67 259.6 206 67.0
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.8e-60 237.7 180 68.3
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.7e-55 222.2 135 83.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 4.8e-55 220.7 300 44.7
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.0e-52 210.7 125 81.6
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 5.3e-38 164.1 139 61.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.9e-35 155.6 201 40.8
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.7e-29 135.2 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.7e-15 88.2 80 61.2
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 3.2e-06 58.5 94 41.5


User provided reference genes

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