Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 0.0e+00 1275.0 637 100.0
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 1.3e-242 843.2 803 62.1
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 2.1e-216 756.1 803 57.7
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.3e-215 752.7 801 56.4
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 6.8e-215 751.1 803 57.3
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 8.9e-207 724.2 815 53.7
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 4.9e-205 718.4 833 53.7
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 1.9e-188 663.3 614 63.7
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 2.2e-144 516.9 831 42.1
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 1.1e-143 514.6 730 45.9
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 8.0e-139 498.4 843 40.1
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.6e-137 493.4 837 40.4
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 7.0e-135 485.3 804 39.6
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 2.7e-134 483.4 842 39.0
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 1.0e-133 481.5 835 39.9
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.1e-132 478.0 834 39.6
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 1.6e-131 474.2 798 41.2
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 1.5e-129 467.6 840 38.1
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 2.6e-129 466.8 839 38.1
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 8.3e-128 461.8 801 39.5
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 7.0e-127 458.8 838 38.2
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 1.2e-126 458.0 834 37.9
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 5.9e-126 455.7 828 36.5
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 1.3e-125 454.5 814 38.2
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 4.2e-124 449.5 833 38.2
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 2.1e-123 447.2 829 36.3
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 8.0e-123 445.3 825 37.1
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 1.4e-122 444.5 802 37.9
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.8e-122 444.1 828 36.2
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 6.8e-122 442.2 829 36.1
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 3.4e-121 439.9 822 37.0
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 4.4e-121 439.5 834 38.1
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 5.7e-121 439.1 825 38.1
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 7.5e-121 438.7 808 38.1
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.3e-120 435.3 823 37.7
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 2.4e-119 433.7 827 37.0
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 2.4e-119 433.7 830 37.2
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 4.1e-119 433.0 813 37.9
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 9.2e-119 431.8 805 37.1
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 1.2e-118 431.4 808 36.8
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 1.6e-118 431.0 790 37.3
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 1.6e-118 431.0 830 37.2
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 4.6e-118 429.5 800 36.1
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.3e-117 427.9 823 37.3
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 2.3e-117 427.2 806 36.2
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.9e-117 426.8 823 37.2
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.9e-117 426.8 823 37.2
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 3.9e-117 426.4 807 36.1
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.6e-117 425.6 809 37.2
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.6e-115 421.0 810 37.3
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 1.0e-114 418.3 830 37.0
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.4e-114 417.9 829 36.2
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 4.0e-114 416.4 809 37.0
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.2e-113 414.8 831 35.7
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.7e-112 411.0 805 35.5
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 2.2e-112 410.6 812 36.0
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 4.9e-112 409.5 815 36.8
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 3.2e-111 406.8 809 35.2
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 2.0e-110 404.1 836 34.1
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 2.7e-110 403.7 800 35.9
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 2.7e-110 403.7 602 43.5
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 6.0e-110 402.5 831 35.0
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 6.0e-110 402.5 786 36.5
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 1.0e-109 401.7 809 34.9
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 6.6e-109 399.1 812 34.7
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 9.5e-108 395.2 652 40.3
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 1.8e-106 391.0 860 34.8
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 2.3e-106 390.6 590 41.4
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 3.1e-106 390.2 805 34.2
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 3.1e-106 390.2 803 34.6
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 1.5e-105 387.9 842 33.7
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 5.8e-105 386.0 775 36.4
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 7.5e-105 385.6 299 71.2
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 1.3e-104 384.8 785 34.5
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 2.9e-104 383.6 825 33.9
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 2.1e-99 367.5 821 34.0
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 2.1e-99 367.5 808 35.1
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 3.6e-99 366.7 805 33.3
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.1e-98 365.2 812 33.6
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 2.3e-98 364.0 815 34.0
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 2.3e-98 364.0 815 34.0
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 3.1e-98 363.6 799 34.3
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 2.0e-97 360.9 805 32.9
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 7.6e-97 359.0 809 32.9
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.3e-96 358.2 797 34.1
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 2.2e-96 357.5 822 33.6
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 2.2e-96 357.5 600 40.2
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 2.9e-96 357.1 811 32.3
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 6.4e-96 355.9 622 39.1
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 1.4e-95 354.8 601 39.1
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 1.6e-94 351.3 610 39.3
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 6.0e-94 349.4 627 38.1
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 7.8e-94 349.0 623 37.7
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 1.7e-93 347.8 804 33.0
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 3.9e-93 346.7 799 33.3
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 6.6e-93 345.9 792 32.1
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 8.6e-93 345.5 809 32.8
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 8.6e-93 345.5 613 40.8
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 1.1e-92 345.1 819 32.7
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.5e-92 344.7 604 38.6
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 5.2e-90 336.3 806 32.5
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 1.5e-89 334.7 655 37.1
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.4e-87 328.2 554 38.8
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.6e-86 324.7 793 32.0
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 1.9e-68 264.6 832 29.2
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 3.7e-67 260.4 528 34.3
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.6e-62 245.0 548 33.4
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.6e-59 235.0 664 29.1
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 7.9e-54 216.1 601 27.3
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 1.9e-52 211.5 320 43.8
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 7.4e-52 209.5 581 29.6
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 1.9e-47 194.9 594 28.5
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 1.9e-47 194.9 619 28.6
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 1.4e-45 188.7 290 41.0
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 7.4e-44 183.0 320 37.5
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 2.9e-40 171.0 558 28.3
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 3.5e-33 147.5 141 51.8
Lsat_1_v5_gn_5_134021 Lactuca sativa HOM05D003161 ORTHO05D005173 1.3e-32 145.6 123 57.7
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 5.7e-28 130.2 83 74.7
CSS0040264 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 8.2e-27 126.3 209 39.7
Ah.15g091660 Amaranthus hybridus HOM05D003161 ORTHO05D005173 3.1e-26 124.4 107 57.0
Gohir.D08G094800 Gossypium hirsutum HOM05D003161 ORTHO05D019240 1.6e-22 112.1 121 52.1
HanXRQChr13g0419181 Helianthus annuus HOM05D003161 ORTHO05D009435 1.8e-21 108.6 67 73.1
Gohir.D06G091175 Gossypium hirsutum HOM05D003161 ORTHO05D019240 1.5e-20 105.5 85 63.5
MD14G1050000 Malus domestica HOM05D003161 ORTHO05D005173 2.0e-20 105.1 168 41.7
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 3.4e-20 104.4 232 32.3
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.8e-19 101.3 234 29.1
Gorai.011G237200 Gossypium raimondii HOM05D003161 ORTHO05D019240 6.3e-19 100.1 85 62.4
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.1e-18 97.8 336 25.9
HPP92_015877 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.2e-17 95.9 141 41.8
Gohir.D10G054000 Gossypium hirsutum HOM05D003161 ORTHO05D047490 1.6e-17 95.5 85 58.8
SMO083G0010 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 7.7e-17 93.2 312 26.3
SMO111G0027 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.7e-16 92.0 319 25.1
Gorai.003G012400 Gossypium raimondii HOM05D003161 ORTHO05D047490 6.5e-16 90.1 85 57.6
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 1.9e-15 88.6 654 21.7
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.7e-14 84.0 227 27.3
Gohir.D12G128000 Gossypium hirsutum HOM05D003161 ORTHO05D036035 6.1e-14 83.6 56 75.0
Gohir.D01G126601 Gossypium hirsutum HOM05D003161 ORTHO05D036035 5.2e-13 80.5 56 71.4
Gorai.012G168200 Gossypium raimondii HOM05D003161 ORTHO05D036035 1.2e-12 79.3 56 71.4
SMO111G0113 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 7.5e-12 76.6 71 45.1
SMO111G0153 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 7.5e-12 76.6 71 45.1
SMO140G0090 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 7.5e-12 76.6 71 45.1
SMO140G0066 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.7e-11 74.3 316 24.4
SMO111G0064 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.9e-11 73.9 71 42.3
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.4e-10 72.4 55 61.8
FvH4_6g22213 Fragaria vesca HOM05D004516 ORTHO05D005194 2.4e-10 71.6 56 66.1
SMO111G0203 Selaginella moellendorffii HOM05D001088 ORTHO05D013615 2.4e-10 71.6 68 42.6
HPP92_015878 Vanilla planifolia HOM05D003161 ORTHO05D019240 4.1e-10 70.9 174 30.5
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 2.7e-09 68.2 155 31.6
Gorai.005G060000 Gossypium raimondii HOM05D003161 ORTHO05D019240 3.5e-09 67.8 56 67.9
HanXRQChr13g0388021 Helianthus annuus HOM05D003161 ORTHO05D005173 2.3e-08 65.1 73 45.2
Os07g0203275 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 6.6e-08 63.5 194 30.4
Aqoxy2G00460 Aquilegia oxysepala HOM05D005887 ORTHO05D007694 5.6e-07 60.5 131 31.3
Lsat_1_v5_gn_3_12560 Lactuca sativa HOM05D004807 ORTHO05D005915 5.6e-07 60.5 92 37.0
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 9.5e-07 59.7 112 28.6
SMO215G0003 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 9.5e-07 59.7 135 26.7
Gohir.D05G345851 Gossypium hirsutum HOM05D003161 ORTHO05D010708 1.2e-06 59.3 86 38.4


User provided reference genes

Program Settings