Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.6e-169 599.4 300 100.0
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.1e-111 407.1 323 70.0
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.4e-101 373.6 304 69.7
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.1e-101 372.1 309 67.0
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.2e-94 347.8 306 64.1
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.5e-90 335.1 352 57.4
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 2.1e-89 333.2 353 56.4
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 6.7e-88 328.2 352 55.4
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 7.0e-85 318.2 351 54.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.6e-84 316.2 284 62.7
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.5e-82 310.5 352 53.7
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 5.5e-82 308.5 357 52.1
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.5e-82 308.5 352 54.0
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.8e-80 303.5 351 51.6
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 3.0e-80 302.8 345 51.6
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.5e-79 300.4 353 51.3
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 2.0e-79 300.1 347 52.7
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 3.3e-79 299.3 352 51.7
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 7.5e-79 298.1 353 51.3
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 7.5e-79 298.1 348 52.6
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.3e-78 297.4 354 50.8
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.7e-78 297.0 350 51.4
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 2.2e-78 296.6 355 51.8
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 3.7e-78 295.8 357 51.0
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.1e-77 294.3 357 51.3
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 4.1e-77 292.4 346 51.7
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 5.3e-77 292.0 346 51.4
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 7.0e-77 291.6 353 50.1
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.6e-76 290.4 352 50.9
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.6e-76 290.4 352 50.9
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.6e-76 290.4 347 51.3
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.7e-76 288.1 352 50.6
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.7e-76 288.1 355 49.0
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.3e-75 287.3 242 63.6
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 2.2e-75 286.6 352 49.7
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 2.2e-75 286.6 354 50.0
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 2.9e-75 286.2 340 51.2
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 2.9e-75 286.2 352 49.1
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 8.5e-75 284.6 349 49.6
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.9e-74 283.5 351 49.0
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.5e-74 283.1 336 50.9
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 4.2e-74 282.3 359 48.7
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.5e-74 282.0 357 48.5
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 7.2e-74 281.6 346 50.3
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.2e-73 280.8 347 48.4
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.1e-73 280.0 347 50.4
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 2.7e-73 279.6 355 49.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 4.7e-73 278.9 347 49.9
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 4.7e-73 278.9 360 48.1
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 6.1e-73 278.5 351 50.4
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 6.1e-73 278.5 361 49.0
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 6.1e-73 278.5 361 49.0
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 6.1e-73 278.5 349 50.4
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 8.0e-73 278.1 352 48.6
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 8.0e-73 278.1 243 61.3
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.8e-72 276.9 355 48.5
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 1.8e-72 276.9 348 48.6
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 4.0e-72 275.8 347 49.3
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.2e-72 275.4 361 48.8
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 5.2e-72 275.4 355 47.9
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 8.8e-72 274.6 354 48.9
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 2.0e-71 273.5 355 47.9
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.6e-71 273.1 345 50.4
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.4e-71 272.7 311 52.4
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 4.4e-71 272.3 240 61.2
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 4.4e-71 272.3 350 48.9
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.4e-71 272.3 355 47.9
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 4.4e-71 272.3 333 48.0
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.2e-70 270.0 242 62.0
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 2.8e-70 269.6 361 45.7
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 3.7e-70 269.2 242 61.2
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 6.3e-70 268.5 360 47.5
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.1e-69 267.7 242 61.6
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.1e-69 267.7 297 52.9
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.1e-69 267.7 319 50.2
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 1.4e-69 267.3 359 47.6
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.8e-69 266.9 242 61.2
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.8e-69 266.9 326 49.7
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 2.4e-69 266.5 326 49.7
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 3.1e-69 266.2 364 46.7
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.1e-69 266.2 350 49.7
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 4.1e-69 265.8 324 49.1
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 5.4e-69 265.4 241 57.7
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 7.0e-69 265.0 356 48.3
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 9.1e-69 264.6 355 46.2
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 1.2e-68 264.2 344 47.4
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.2e-68 264.2 347 47.8
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.2e-68 264.2 349 47.3
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.2e-68 264.2 241 60.6
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.7e-68 263.1 326 49.4
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.5e-68 262.3 241 56.8
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.5e-68 262.3 241 56.8
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 4.5e-68 262.3 245 60.4
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 5.9e-68 261.9 243 60.1
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 5.9e-68 261.9 243 60.1
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 5.9e-68 261.9 246 56.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 7.7e-68 261.5 243 60.1
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 3.8e-67 259.2 354 45.8
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 8.5e-67 258.1 243 59.7
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.1e-66 257.7 240 57.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 2.5e-66 256.5 352 45.2
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 3.2e-66 256.1 330 49.4
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.2e-66 255.8 351 47.0
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 4.2e-66 255.8 352 45.5
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 7.2e-66 255.0 338 46.2
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 9.4e-66 254.6 250 54.8
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 8.8e-64 248.1 375 43.7
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.4e-63 246.1 372 43.3
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.8e-62 243.0 337 44.5
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 2.0e-60 236.9 351 42.7
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.3e-58 229.6 153 75.2
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 6.1e-57 225.3 221 62.4
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 6.4e-54 215.3 144 72.9
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.8e-53 213.8 332 41.6
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.6e-52 210.7 209 57.4
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 2.0e-52 210.3 160 66.2
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 4.3e-50 202.6 293 41.6
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 3.0e-43 179.9 281 44.8
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.9e-37 160.6 364 34.6
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.2e-36 157.9 93 79.6
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.7e-35 154.1 105 71.4
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.6e-33 147.5 152 59.9
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.4e-32 144.4 146 54.8
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.2e-31 141.4 276 39.1
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 3.9e-27 126.3 68 83.8
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.5e-26 124.4 144 54.9
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 3.3e-26 123.2 73 78.1
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 2.8e-25 120.2 71 78.9
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 6.9e-24 115.5 258 33.7
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 4.6e-20 102.8 124 45.2
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 7.8e-20 102.1 127 42.5
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.7e-19 100.9 55 87.3
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 4.8e-17 92.8 360 26.9
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 5.8e-15 85.9 67 59.7
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 2.2e-14 84.0 72 58.3
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.2e-13 80.1 61 62.3
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 3.2e-13 80.1 68 58.8
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.4e-13 79.3 64 54.7
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.3e-13 78.6 61 62.3
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.2e-12 78.2 64 54.7
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 2.7e-12 77.0 66 57.6
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 3.5e-12 76.6 68 57.4
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.1e-08 65.1 61 59.0
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.5e-07 59.7 81 40.7


User provided reference genes

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