Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 5.7e-186 654.1 320 100.0
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 3.7e-185 651.4 320 99.4
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-181 639.8 318 98.1
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-172 608.6 323 92.6
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 4.0e-171 604.7 315 94.0
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-169 599.7 315 93.7
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.9e-165 585.9 331 88.8
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 8.0e-164 580.5 326 89.3
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.8e-163 579.3 326 89.3
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 7.5e-162 573.9 326 89.3
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-161 573.2 328 88.7
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-160 568.5 326 88.3
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.8e-156 555.4 329 87.2
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 3.6e-156 555.1 327 84.7
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-151 538.9 331 84.0
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.6e-148 529.6 290 88.6
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 2.8e-148 528.9 375 74.1
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 8.1e-148 527.3 291 89.0
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 8.9e-147 523.9 365 74.0
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 3.7e-145 518.5 301 86.7
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.9e-141 506.1 326 79.4
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.4e-136 489.2 360 71.7
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.9e-134 481.9 334 75.7
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.8e-132 475.7 316 75.0
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.6e-132 475.3 316 74.7
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 3.6e-132 475.3 316 74.7
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.2e-130 470.3 324 73.8
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.2e-129 466.1 325 74.2
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 4.9e-129 464.9 319 73.7
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 8.4e-129 464.2 324 71.0
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.9e-128 463.0 319 73.4
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 5.4e-128 461.5 316 72.8
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 7.1e-128 461.1 322 72.0
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.6e-127 459.9 324 70.7
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.6e-127 459.9 324 69.8
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.6e-127 459.9 324 69.8
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.1e-127 459.5 317 73.2
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.7e-127 459.1 316 72.5
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.7e-127 459.1 324 72.2
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 3.5e-127 458.8 319 71.2
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 6.0e-127 458.0 316 71.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.0e-126 457.2 312 72.8
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.3e-126 456.8 325 71.7
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 3.0e-126 455.7 316 72.5
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 3.0e-126 455.7 320 70.9
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 3.9e-126 455.3 324 70.1
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 3.9e-126 455.3 315 70.8
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.1e-125 453.8 312 72.1
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.5e-125 453.4 323 71.5
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.9e-125 453.0 327 71.9
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.5e-125 452.6 328 69.5
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 3.3e-125 452.2 317 71.3
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 3.3e-125 452.2 325 70.5
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 5.6e-125 451.4 313 72.2
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 5.6e-125 451.4 315 72.1
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.3e-125 451.1 317 70.3
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.3e-125 451.1 317 70.3
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 7.3e-125 451.1 318 70.4
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 9.6e-125 450.7 316 71.2
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.6e-124 449.9 319 70.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.8e-124 449.1 327 70.9
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 6.2e-124 448.0 316 71.5
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.1e-123 447.2 317 71.0
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.1e-123 447.2 325 72.0
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.4e-123 446.8 322 69.6
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.4e-123 446.8 316 71.2
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.8e-123 446.4 324 70.1
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 3.1e-123 445.7 318 70.4
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 4.0e-123 445.3 316 71.2
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 6.9e-123 444.5 324 69.8
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 6.9e-123 444.5 321 70.1
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.5e-122 443.4 324 70.1
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.0e-122 443.0 317 70.0
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 7.6e-122 441.0 317 70.7
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 9.9e-122 440.7 323 69.0
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 4.9e-121 438.3 316 70.6
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 4.9e-121 438.3 323 70.6
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 1.1e-120 437.2 325 68.6
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 5.4e-120 434.9 324 68.2
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 9.3e-120 434.1 325 68.0
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.5e-119 432.2 334 67.4
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 7.9e-119 431.0 305 68.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.0e-118 430.6 320 67.8
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.3e-118 430.3 319 68.3
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.3e-118 429.5 324 68.5
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 6.7e-118 427.9 319 67.4
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.5e-117 426.8 321 67.0
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.5e-117 426.0 319 67.1
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 3.6e-116 422.2 322 66.5
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.4e-115 419.5 323 67.5
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 3.4e-114 415.6 262 76.3
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 7.6e-114 414.5 318 65.1
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 2.9e-113 412.5 265 76.6
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 3.8e-113 412.1 362 61.6
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 3.8e-113 412.1 316 65.8
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 7.1e-112 407.9 385 59.0
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.6e-111 406.8 260 76.5
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-110 403.7 306 68.0
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.3e-110 403.7 307 68.4
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 5.1e-110 401.7 321 63.6
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.9e-109 399.8 283 70.3
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.8e-107 393.3 318 62.9
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.4e-107 392.9 319 62.1
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 4.0e-107 392.1 290 69.0
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.2e-106 390.6 324 64.8
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.6e-106 389.4 325 63.4
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 7.6e-106 387.9 325 62.2
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.2e-105 386.3 260 73.8
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 6.5e-105 384.8 314 61.8
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 9.3e-104 380.9 300 63.3
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.6e-103 380.2 239 77.4
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 4.6e-103 378.6 323 60.4
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 6.0e-103 378.3 323 60.1
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 7.9e-103 377.9 314 59.2
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 3.0e-102 375.9 229 79.5
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 6.7e-102 374.8 330 61.5
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 8.7e-102 374.4 257 70.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 1.1e-101 374.0 318 59.1
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.3e-100 370.5 287 62.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 4.1e-99 365.5 347 58.2
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 4.1e-99 365.5 340 60.0
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 7.6e-98 361.3 240 75.4
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.6e-95 353.6 330 56.7
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 3.6e-95 352.4 234 73.5
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.3e-94 350.5 334 57.5
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 4.8e-92 342.0 239 72.0
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 3.1e-91 339.3 303 61.4
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 5.3e-91 338.6 314 62.4
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 1.2e-90 337.4 303 61.1
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 1.0e-89 334.3 304 61.8
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.3e-89 334.0 294 56.5
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 3.8e-89 332.4 324 60.8
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 6.5e-89 331.6 304 60.9
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-88 330.5 303 60.4
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-88 330.5 303 60.4
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-88 330.5 303 60.4
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-88 330.5 255 67.8
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.9e-88 330.1 306 61.4
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.9e-88 330.1 205 78.5
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.9e-88 330.1 304 54.9
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.6e-87 327.0 301 61.1
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 8.8e-86 321.2 318 57.9
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 8.8e-86 321.2 270 59.6
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-85 320.9 260 65.0
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-85 320.9 245 68.2
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 9.7e-85 317.8 289 55.7
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.0e-81 307.8 266 57.1
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.0e-78 297.7 234 61.5
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.2e-78 295.4 320 53.8
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.0e-73 278.9 304 53.6
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.1e-72 277.7 333 50.2
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 9.7e-69 264.6 264 58.7
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.7e-68 262.7 194 67.0
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-66 257.7 176 72.7
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.5e-66 256.1 266 54.5
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.0e-62 242.7 166 73.5
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.1e-59 232.6 310 44.5
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 7.7e-58 228.4 301 46.8
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.7e-57 227.3 228 57.0
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 2.9e-57 226.5 153 68.6
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-56 224.2 300 47.3
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.2e-55 221.1 153 68.0
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.6e-53 213.4 155 67.7
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.8e-52 209.9 246 47.6
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 3.1e-51 206.5 169 58.0
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.9e-49 199.9 166 60.2
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 1.5e-48 197.6 163 62.0
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.3e-48 196.4 250 48.4
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 5.6e-48 195.7 241 43.2
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 4.9e-44 182.6 202 47.0
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.0e-41 174.9 265 38.9
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-41 174.5 136 62.5
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.6e-39 167.5 228 39.9
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 2.2e-36 157.1 107 70.1
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.5e-32 143.7 124 58.1
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.1e-31 140.6 122 60.7
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.3e-30 137.1 83 77.1
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.8e-29 132.5 111 63.1
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 8.3e-28 128.6 77 71.4
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.9e-27 127.5 139 48.9
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-25 121.3 88 64.8
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 1.3e-20 104.8 54 94.4
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 3.9e-17 93.2 64 73.4
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.1e-14 83.6 88 53.4
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.4e-12 75.5 51 72.5
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.4e-12 75.5 51 72.5
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-11 74.3 51 70.6
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.4e-11 72.8 51 68.6
Psat1g000040 Pisum sativum HOM05D003576 ORTHO05D004124 1.0e-09 68.6 76 48.7


User provided reference genes

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