Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 5.4e-244 847.4 490 100.0
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 1.6e-235 819.3 490 96.9
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 4.6e-235 817.8 491 97.6
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 1.1e-223 780.0 495 93.7
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 1.6e-200 703.0 496 84.7
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 8.4e-189 664.1 499 81.2
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 2.5e-188 662.5 500 81.4
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.1e-183 647.1 502 78.3
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 3.8e-181 638.6 497 78.7
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 1.6e-179 633.3 502 77.7
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 6.1e-179 631.3 503 77.9
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 6.3e-176 621.3 499 74.3
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 1.5e-174 616.7 471 76.6
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 6.1e-171 604.7 467 71.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.4e-167 592.8 464 78.2
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 7.0e-167 591.3 463 76.7
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 4.2e-148 528.9 503 62.8
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 8.0e-147 524.6 490 59.6
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.8e-146 523.5 446 71.5
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 4.4e-137 492.3 500 61.0
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 2.9e-136 489.6 489 57.7
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 3.9e-133 479.2 510 57.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 1.6e-131 473.8 515 57.9
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 2.6e-129 466.5 519 56.5
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 2.6e-129 466.5 518 56.9
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 2.6e-129 466.5 515 58.4
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 3.4e-129 466.1 517 56.9
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 4.4e-129 465.7 499 56.9
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.3e-128 464.2 503 56.1
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.7e-128 463.8 509 58.5
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 2.9e-128 463.0 506 55.5
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.4e-127 460.7 517 55.9
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.4e-127 459.9 507 58.0
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 3.0e-125 453.0 504 56.9
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 6.6e-125 451.8 509 54.8
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.5e-124 450.7 507 58.0
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.5e-124 450.7 505 55.6
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 5.6e-124 448.7 505 55.8
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 1.2e-123 447.6 528 55.9
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.2e-123 447.6 502 57.0
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 1.6e-123 447.2 384 65.9
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 2.8e-123 446.4 489 59.1
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 4.7e-123 445.7 501 55.3
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 6.2e-123 445.3 509 57.4
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.0e-122 442.6 506 57.5
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 5.2e-122 442.2 511 54.8
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 5.2e-122 442.2 505 53.9
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 8.9e-122 441.4 508 53.5
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.6e-121 439.9 510 54.5
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 3.4e-121 439.5 440 58.9
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 4.4e-121 439.1 509 53.4
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 5.8e-121 438.7 509 53.6
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 9.8e-121 438.0 512 55.5
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 9.8e-121 438.0 426 60.3
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 9.8e-121 438.0 513 54.8
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 3.7e-120 436.0 525 53.3
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 3.7e-120 436.0 426 58.2
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 4.9e-120 435.6 509 53.0
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 4.9e-120 435.6 499 58.3
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 4.1e-119 432.6 498 54.8
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.4e-119 432.2 503 56.7
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 7.1e-119 431.8 487 55.2
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.2e-118 431.0 383 62.7
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 2.1e-118 430.3 435 59.8
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 6.0e-118 428.7 448 57.1
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.3e-117 427.6 492 55.3
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.3e-117 426.8 514 54.9
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 5.1e-117 425.6 509 54.2
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.5e-116 424.1 500 54.8
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 1.5e-116 424.1 470 58.1
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.9e-116 423.7 384 63.3
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 1.9e-116 423.7 384 63.5
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 2.5e-116 423.3 483 57.6
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 2.5e-116 423.3 499 53.9
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 4.3e-116 422.5 505 53.5
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 5.6e-116 422.2 507 52.1
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 1.2e-115 421.0 513 52.4
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.6e-115 420.6 515 49.1
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.3e-114 416.8 514 53.1
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 2.3e-114 416.8 513 51.9
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 4.0e-114 416.0 509 52.3
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 8.9e-114 414.8 492 55.3
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 2.0e-113 413.7 430 58.8
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 7.6e-113 411.8 508 51.4
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.3e-112 411.0 432 56.9
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 2.4e-111 406.8 513 52.4
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.2e-111 406.4 509 49.3
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 3.2e-111 406.4 513 52.2
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 5.4e-111 405.6 592 42.6
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.6e-110 404.1 505 51.1
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.1e-110 403.7 385 59.0
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.7e-110 403.3 547 48.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 7.8e-110 401.7 387 59.7
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 1.7e-109 400.6 513 52.0
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.7e-109 400.6 370 61.9
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 6.6e-109 398.7 502 53.4
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 6.6e-109 398.7 498 52.4
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.1e-108 397.9 494 49.6
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 2.5e-108 396.7 494 52.2
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.2e-104 383.6 473 53.1
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 8.4e-104 381.7 495 50.9
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 5.4e-103 379.0 510 49.2
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 6.6e-101 372.1 376 57.4
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.5e-100 370.9 430 56.5
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 4.3e-100 369.4 354 60.5
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 7.3e-100 368.6 532 45.1
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.9e-98 362.1 395 51.1
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 1.1e-95 354.8 506 48.2
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 1.0e-93 348.2 495 43.0
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 7.4e-92 342.0 264 70.5
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 4.9e-88 329.3 495 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 4.2e-87 326.2 418 50.2
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.5e-84 317.8 393 47.8
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 5.8e-81 305.8 515 44.3
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 3.8e-80 303.1 246 68.3
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.9e-79 300.8 520 44.2
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.3e-77 294.7 498 41.4
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 2.9e-72 276.9 345 53.3
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 3.8e-64 250.0 408 44.6
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 8.5e-64 248.8 552 38.0
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 1.3e-59 235.0 256 46.5
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.3e-53 214.2 267 50.6
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 2.9e-48 197.2 506 30.8
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.8e-48 196.8 187 53.5
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.3e-42 176.4 475 34.9
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 2.7e-41 174.1 226 41.6
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.6e-33 148.3 389 28.8
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 3.5e-33 147.1 116 67.2
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 6.5e-32 142.9 141 56.0
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 2.2e-27 127.9 152 50.7
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.2e-27 127.9 161 50.3
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 5.4e-26 123.2 135 52.6
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 1.2e-25 122.1 93 67.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.4e-18 98.6 141 43.3
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 5.4e-18 96.7 450 23.8
BcaB06g25383 Brassica carinata HOM05D005639 ORTHO05D093847 4.6e-09 67.0 93 43.0
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 2.1e-06 58.2 121 29.8


User provided reference genes

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