Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.3e-211 739.6 412 100.0
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 6.8e-208 727.2 413 98.8
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-207 725.7 416 93.8
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 1.6e-185 652.9 416 86.5
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.8e-168 596.3 430 77.2
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.4e-167 592.0 430 83.3
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.1e-165 587.0 429 82.8
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.9e-165 586.3 429 82.5
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 7.1e-165 584.3 365 85.8
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.1e-164 582.8 425 82.8
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 3.9e-163 578.6 422 82.7
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 7.4e-162 574.3 431 75.4
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 6.9e-160 567.8 430 79.5
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.7e-158 563.1 367 83.7
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.3e-154 548.5 430 78.4
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.7e-148 529.3 422 72.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.8e-144 516.5 422 71.1
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 3.8e-142 508.8 412 73.5
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.1e-141 507.3 413 67.1
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.2e-140 503.8 420 68.6
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.6e-140 503.4 420 67.6
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.6e-140 503.4 416 72.1
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.1e-140 503.1 416 69.2
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 8.0e-140 501.1 425 65.6
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.0e-140 501.1 430 66.5
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.0e-139 500.7 416 71.2
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 1.0e-139 500.7 422 69.0
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 5.2e-139 498.4 414 66.9
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.1e-138 497.3 415 72.5
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.5e-138 496.9 416 72.4
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 2.0e-138 496.5 415 65.8
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 2.6e-138 496.1 418 69.6
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 4.4e-138 495.4 433 64.9
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 9.7e-138 494.2 414 66.9
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.2e-137 493.0 434 65.2
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.8e-137 492.7 415 69.6
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 2.8e-137 492.7 416 70.4
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 2.8e-137 492.7 421 64.8
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 4.8e-137 491.9 426 65.3
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.8e-137 491.9 429 67.8
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.1e-136 487.6 430 64.2
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.0e-135 486.5 425 67.8
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.0e-135 486.5 420 63.8
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 3.5e-135 485.7 416 71.4
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.5e-135 485.7 414 65.0
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.5e-135 485.3 431 64.3
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 7.7e-135 484.6 414 71.0
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.3e-134 483.8 431 64.0
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.7e-134 483.4 426 68.8
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.7e-134 483.4 432 66.7
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.7e-134 483.4 422 67.3
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.7e-134 483.4 431 64.0
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 2.2e-134 483.0 427 66.0
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 2.9e-134 482.6 432 66.7
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.9e-134 482.6 423 66.9
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 6.5e-134 481.5 432 66.4
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 6.5e-134 481.5 414 69.8
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 8.5e-134 481.1 423 69.3
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.5e-133 480.3 419 64.0
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.9e-133 479.9 429 63.4
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.5e-133 479.6 414 70.0
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.5e-133 479.6 414 64.5
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 2.5e-133 479.6 423 66.4
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 2.5e-133 479.6 414 64.5
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 3.2e-133 479.2 415 65.3
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 3.2e-133 479.2 410 67.1
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 3.6e-132 475.7 402 70.1
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 3.6e-132 475.7 408 63.2
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 6.1e-132 474.9 418 64.6
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.0e-131 474.2 423 66.9
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 3.0e-131 472.6 431 65.2
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 4.0e-131 472.2 414 66.9
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.6e-130 469.5 416 64.2
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 5.7e-130 468.4 418 69.1
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 9.8e-130 467.6 428 66.1
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 8.3e-129 464.5 416 65.4
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.1e-128 464.2 407 65.8
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.7e-127 459.5 418 64.6
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 7.7e-127 458.0 413 67.1
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.7e-126 456.8 406 67.2
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 2.2e-126 456.4 417 68.8
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.1e-125 454.1 397 68.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.5e-125 451.8 370 67.3
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 4.0e-123 445.7 421 62.0
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.0e-122 443.4 427 63.5
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 4.9e-121 438.7 409 64.8
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 6.3e-121 438.3 418 63.9
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.1e-120 437.6 418 66.3
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 3.1e-120 436.0 423 65.2
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-119 433.7 427 65.1
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 2.0e-119 433.3 395 67.8
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 7.7e-119 431.4 390 62.6
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 6.6e-118 428.3 408 58.1
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 8.6e-118 427.9 414 58.5
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 8.6e-118 427.9 409 58.9
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.1e-117 427.6 436 61.2
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 4.3e-117 425.6 439 56.0
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.0e-115 421.0 381 61.7
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.4e-115 420.6 405 58.3
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.2e-114 417.5 409 57.9
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.5e-114 417.2 421 55.8
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 7.5e-114 414.8 390 59.0
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.0e-111 406.8 437 54.9
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 1.2e-108 397.5 388 63.1
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 7.0e-104 381.7 291 71.8
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.3e-97 360.9 407 53.8
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.0e-94 351.3 329 60.8
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.9e-93 347.1 409 50.1
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 6.2e-92 342.0 287 66.6
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 6.8e-91 338.6 228 76.3
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.1e-85 321.2 447 48.5
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 3.6e-84 316.2 445 46.7
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.1e-80 302.0 365 54.5
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 7.9e-71 271.9 281 63.7
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.3e-70 271.2 161 84.5
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 8.1e-68 261.9 347 47.8
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.1e-67 261.5 332 48.8
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 2.6e-66 256.9 164 78.7
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 3.5e-63 246.5 277 53.8
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 8.7e-62 241.9 332 52.4
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 5.8e-58 229.2 138 84.8
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.5e-56 222.6 158 72.2
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.1e-53 214.9 153 94.8
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.3e-53 213.4 115 90.4
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.1e-48 198.4 168 60.7
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 7.4e-45 185.7 116 81.0
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 6.3e-44 182.6 122 76.2
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 4.6e-39 166.4 159 55.3
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 5.1e-38 162.9 156 50.0
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.7e-36 157.9 281 43.8
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 9.1e-35 152.1 409 35.0
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 7.7e-34 149.1 116 67.2
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 6.5e-33 146.0 237 41.8
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 7.2e-24 115.9 97 62.9
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.4e-19 100.9 60 78.3
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.1e-19 100.1 161 41.0
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 5.3e-19 99.8 72 66.7
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.0e-19 99.4 60 76.7
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 7.0e-19 99.4 60 76.7
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.5e-18 97.1 60 75.0
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 5.0e-17 93.2 68 66.2
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.1e-16 92.0 68 64.7
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.9e-16 91.3 66 65.2
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 7.2e-16 89.4 46 93.5
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 7.2e-16 89.4 46 93.5
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 6.8e-14 82.8 141 36.2
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.6e-13 80.9 107 45.8
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.3e-12 78.6 154 37.0
BcaC08g43579 Brassica carinata HOM05D004820 ORTHO05D001418 7.7e-10 69.3 35 94.3
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 3.0e-06 57.4 36 69.4


User provided reference genes

Program Settings