Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 7.8e-43 176.8 93 100.0
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 7.8e-43 176.8 93 100.0
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.2e-40 169.5 93 96.8
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 4.1e-36 154.5 93 90.3
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 4.6e-35 151.0 93 88.2
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.8e-35 150.2 96 84.4
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-34 149.4 94 86.2
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.3e-34 149.4 94 84.0
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.5e-33 146.0 94 85.1
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.5e-33 145.2 94 83.0
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.5e-33 145.2 94 83.0
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 4.3e-33 144.4 96 82.3
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.6e-32 142.5 95 82.1
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.8e-32 141.7 93 83.9
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 8.1e-32 140.2 95 84.2
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.3e-26 122.9 88 75.0
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 5.1e-26 120.9 76 78.9
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 4.7e-24 114.4 71 81.7
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.5e-22 109.4 80 73.8
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.6e-22 108.6 96 64.6
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 7.6e-22 107.1 86 69.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.9e-22 106.7 96 63.5
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 9.9e-22 106.7 61 96.7
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.7e-21 104.8 69 78.3
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 8.4e-21 103.6 87 62.1
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.9e-20 102.4 89 58.4
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 2.4e-20 102.1 87 63.2
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.2e-20 101.7 90 58.9
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.1e-20 101.3 76 67.1
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 9.2e-20 100.1 81 63.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.1e-19 99.0 71 69.0
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 2.7e-19 98.6 87 57.5
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 2.7e-19 98.6 60 86.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.7e-19 98.6 95 55.8
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 3.5e-19 98.2 80 61.2
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 3.5e-19 98.2 76 63.2
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.6e-19 97.8 75 66.7
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.0e-18 96.7 87 58.6
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.0e-18 96.7 87 58.6
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.3e-18 96.3 87 60.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.3e-18 96.3 83 62.7
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-18 95.9 95 58.9
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.7e-18 95.9 88 59.1
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.0e-18 95.1 75 64.0
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.0e-18 95.1 95 58.9
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 3.9e-18 94.7 81 60.5
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.9e-18 94.7 95 54.7
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 3.9e-18 94.7 92 53.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 5.1e-18 94.4 75 61.3
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 5.1e-18 94.4 81 59.3
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 8.6e-18 93.6 58 82.8
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.1e-17 93.2 86 55.8
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-17 93.2 95 53.7
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.1e-17 93.2 70 64.3
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.5e-17 92.8 89 58.4
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.5e-17 92.8 96 54.2
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.5e-17 92.8 95 53.7
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.5e-17 92.8 86 55.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.5e-17 92.0 81 59.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 2.5e-17 92.0 80 58.8
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.3e-17 91.7 95 55.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 4.3e-17 91.3 91 52.7
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 4.3e-17 91.3 86 59.3
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 5.6e-17 90.9 95 52.6
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.3e-17 90.5 79 58.2
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 7.3e-17 90.5 80 58.8
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 7.3e-17 90.5 84 56.0
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 7.3e-17 90.5 81 59.3
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 7.3e-17 90.5 75 62.7
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 9.6e-17 90.1 92 52.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.2e-16 89.7 95 56.8
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.6e-16 89.4 94 54.3
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.1e-16 89.0 81 55.6
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.8e-16 88.6 75 58.7
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 2.8e-16 88.6 80 58.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.8e-16 88.6 94 52.1
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 2.8e-16 88.6 90 54.4
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.6e-16 88.2 89 53.9
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.6e-16 88.2 89 53.9
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 4.7e-16 87.8 94 54.3
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 4.7e-16 87.8 95 53.7
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 4.7e-16 87.8 81 54.3
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 4.7e-16 87.8 91 54.9
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 6.2e-16 87.4 94 52.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.1e-16 87.0 95 50.5
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 8.1e-16 87.0 76 59.2
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.4e-15 86.3 80 57.5
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.4e-15 86.3 96 49.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.4e-15 86.3 90 54.4
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.8e-15 85.9 85 49.4
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.8e-15 85.9 75 58.7
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.8e-15 85.9 85 54.1
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.4e-15 85.5 90 53.3
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 6.8e-15 84.0 83 57.8
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 8.9e-15 83.6 76 55.3
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 8.9e-15 83.6 79 58.2
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.2e-14 83.2 78 52.6
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.5e-14 82.8 78 52.6
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.0e-14 82.4 90 47.8
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.0e-14 82.4 76 55.3
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.0e-14 82.4 80 55.0
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 4.4e-14 81.3 80 55.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 5.8e-14 80.9 80 55.0
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 5.8e-14 80.9 78 56.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 5.8e-14 80.9 78 56.4
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 5.8e-14 80.9 81 53.1
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 9.9e-14 80.1 97 46.4
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.9e-14 80.1 90 53.3
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 9.9e-14 80.1 69 55.1
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 9.9e-14 80.1 71 59.2
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.7e-13 79.3 80 57.5
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 2.9e-13 78.6 75 54.7
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.9e-13 78.6 90 52.2
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 3.8e-13 78.2 78 51.3
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.4e-13 77.4 90 51.1
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 6.4e-13 77.4 78 56.4
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 6.4e-13 77.4 89 51.7
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.4e-13 77.0 90 52.2
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.1e-12 76.6 90 52.2
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 1.4e-12 76.3 90 47.8
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.4e-12 74.3 78 53.8
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 7.1e-12 73.9 45 82.2
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.5e-11 71.6 90 43.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 4.6e-11 71.2 87 46.0
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 6.0e-11 70.9 60 60.0
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.7e-10 69.3 63 52.4
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.0e-10 68.6 90 43.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.6e-10 67.4 90 43.3
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.5e-09 66.2 81 43.2
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.5e-09 65.5 46 69.6
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.3e-09 63.9 79 44.3
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.6e-08 62.8 55 56.4
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.2e-06 56.6 48 58.3
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.0e-06 55.8 48 54.2
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 2.6e-06 55.5 49 55.1


User provided reference genes

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