Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 2.9e-171 605.1 303 100.0
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 4.1e-141 505.0 256 98.0
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 5.2e-96 355.1 264 72.0
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 4.5e-92 342.0 264 70.5
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 4.5e-92 342.0 264 70.5
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 2.9e-91 339.3 264 69.7
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 4.9e-86 322.0 266 65.4
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 4.1e-85 318.9 264 65.2
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 9.2e-85 317.8 264 64.8
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 6.6e-83 311.6 269 63.6
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 1.1e-82 310.8 264 63.6
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 4.7e-81 305.4 269 62.1
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 4.0e-80 302.4 267 60.7
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 5.8e-79 298.5 269 61.7
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.7e-78 295.8 267 59.9
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.4e-77 293.9 264 61.0
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 7.3e-74 281.6 267 57.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 4.9e-70 268.9 269 56.9
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 3.2e-69 266.2 269 55.0
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 7.6e-63 245.0 267 50.2
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 9.2e-61 238.0 244 52.0
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 3.6e-57 226.1 268 49.3
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 5.8e-55 218.8 269 48.0
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 2.4e-53 213.4 279 44.1
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.2e-53 213.0 280 42.9
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 3.2e-53 213.0 270 44.8
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 4.2e-53 212.6 333 39.0
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 5.4e-53 212.2 279 44.8
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 2.1e-52 210.3 267 45.7
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 2.7e-52 209.9 278 44.2
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 3.5e-52 209.5 278 45.0
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 3.5e-52 209.5 276 45.3
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 3.5e-52 209.5 279 43.0
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 4.6e-52 209.1 286 43.0
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 4.6e-52 209.1 282 46.1
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.0e-52 208.8 284 43.0
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 1.0e-51 208.0 282 45.0
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 1.0e-51 208.0 279 44.8
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.3e-51 207.6 279 43.4
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.3e-51 207.6 279 43.0
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.7e-51 207.2 289 44.3
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 3.9e-51 206.1 279 43.4
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.9e-51 206.1 279 41.6
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 3.9e-51 206.1 279 41.6
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 3.9e-51 206.1 266 44.0
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 5.1e-51 205.7 279 43.0
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 5.1e-51 205.7 276 43.1
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 6.6e-51 205.3 279 41.9
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 6.6e-51 205.3 279 41.2
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 6.6e-51 205.3 281 42.3
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 8.7e-51 204.9 278 43.2
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 8.7e-51 204.9 278 42.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 8.7e-51 204.9 280 43.2
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.1e-50 204.5 278 43.2
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.5e-50 204.1 279 40.9
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.5e-50 204.1 279 41.9
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 1.9e-50 203.8 279 43.7
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 3.3e-50 203.0 278 42.4
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 7.3e-50 201.8 275 42.9
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 9.6e-50 201.4 279 44.4
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.3e-49 201.1 270 42.6
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.6e-49 200.7 267 41.9
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.6e-49 200.7 281 42.0
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 2.1e-49 200.3 271 43.2
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 2.8e-49 199.9 279 41.9
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 3.6e-49 199.5 282 41.5
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 3.6e-49 199.5 273 42.5
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 4.8e-49 199.1 275 40.4
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 6.2e-49 198.7 279 41.2
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 8.1e-49 198.4 272 43.0
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 8.1e-49 198.4 279 41.9
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.1e-48 198.0 279 41.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.4e-48 197.6 271 42.8
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.8e-48 197.2 271 42.8
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.8e-48 197.2 278 41.7
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 2.4e-48 196.8 276 40.9
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 4.0e-48 196.1 276 41.7
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 4.0e-48 196.1 278 42.4
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 5.3e-48 195.7 277 42.6
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 6.9e-48 195.3 278 40.6
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.0e-48 194.9 271 42.4
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 9.0e-48 194.9 283 42.8
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.2e-47 194.5 280 41.8
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.0e-47 193.7 277 42.2
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 2.0e-47 193.7 277 41.9
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.6e-47 193.4 276 41.3
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 2.6e-47 193.4 281 41.6
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 3.4e-47 193.0 276 42.8
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 3.4e-47 193.0 278 42.4
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 7.6e-47 191.8 275 41.5
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 9.9e-47 191.4 279 40.1
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 9.9e-47 191.4 277 41.5
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.3e-46 191.0 269 39.4
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.2e-46 190.3 278 43.2
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.2e-46 190.3 277 40.8
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 2.9e-46 189.9 283 41.0
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 3.8e-46 189.5 282 42.6
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 6.4e-46 188.7 281 42.7
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 6.4e-46 188.7 277 41.2
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 8.4e-46 188.3 279 41.2
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.4e-45 187.6 281 39.1
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.4e-45 187.6 277 40.8
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.9e-45 187.2 279 42.3
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 3.2e-45 186.4 278 38.8
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.2e-44 184.5 278 40.6
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 2.7e-44 183.3 276 40.6
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 7.4e-42 175.3 276 39.9
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 1.6e-41 174.1 277 39.4
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 4.8e-41 172.6 276 39.9
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 1.8e-40 170.6 272 38.6
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 6.9e-40 168.7 247 41.7
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 1.5e-39 167.5 310 36.1
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.0e-39 167.2 300 36.7
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 6.4e-38 162.2 265 38.9
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 6.7e-35 152.1 290 35.5
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 8.2e-33 145.2 306 34.0
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.9e-30 136.7 278 34.9
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 8.4e-30 135.2 284 35.2
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 5.5e-29 132.5 294 35.4
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 7.1e-29 132.1 215 35.8
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 1.3e-27 127.9 120 59.2
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 8.5e-22 108.6 330 27.0
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 7.2e-21 105.5 255 29.8
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.0e-19 100.1 72 59.7
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.0e-19 100.1 117 42.7
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 3.9e-19 99.8 166 34.3
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 1.1e-18 98.2 98 56.1
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 5.7e-18 95.9 118 49.2
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 3.1e-16 90.1 87 55.2
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 5.3e-16 89.4 107 50.5
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 2.6e-15 87.0 164 33.5
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 7.7e-15 85.5 99 50.5
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 2.9e-14 83.6 228 29.4
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.8e-08 64.3 253 24.1
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.6e-07 60.5 118 38.1


User provided reference genes

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