Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p30510 Brassica napus HOM05D001880 ORTHO05D020102 5.5e-125 451.1 239 100.0
BcaB06g28489 Brassica carinata HOM05D001880 ORTHO05D020102 3.6e-60 235.7 211 67.3
BcaC08g45419 Brassica carinata HOM05D001880 ORTHO05D020102 4.0e-59 232.3 211 64.9
BolC6t35463H Brassica oleracea HOM05D001880 ORTHO05D020102 2.5e-29 133.3 71 94.4
BolC6t38214H Brassica oleracea HOM05D001880 ORTHO05D020102 2.5e-29 133.3 71 94.4
C03p85230 Brassica napus HOM05D001880 ORTHO05D004730 1.3e-28 131.0 71 93.0
BolC4t27535H Brassica oleracea HOM05D001880 ORTHO05D020102 1.6e-28 130.6 71 93.0
C04p60340 Brassica napus HOM05D001880 ORTHO05D020102 6.2e-28 128.6 71 91.5
A01p05590 Brassica napus HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
C01p06170 Brassica napus HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
BolC1t00615H Brassica oleracea HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
BraA01t00530Z Brassica rapa HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
BraA01t03248Z Brassica rapa HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
Sp7g30490 Schrenkiella parvula HOM05D001880 ORTHO05D004730 3.4e-18 96.3 61 80.3
BcaC09g52067 Brassica carinata HOM05D001880 ORTHO05D004730 5.8e-18 95.5 61 80.3
Carub.0007s0776 Capsella rubella HOM05D001880 ORTHO05D004730 2.2e-17 93.6 61 77.0
AT4G32720 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 2.9e-17 93.2 61 75.4
AL7G19020 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 3.8e-17 92.8 61 73.8
BolC3t21003H Brassica oleracea HOM05D001880 ORTHO05D004730 8.4e-17 91.7 63 73.0
CARHR240720 Cardamine hirsuta HOM05D001880 ORTHO05D004730 1.4e-16 90.9 61 73.8
BcaNung06641 Brassica carinata HOM05D001880 ORTHO05D004730 1.9e-16 90.5 48 89.6
C03p87060 Brassica napus HOM05D001880 ORTHO05D000054 1.9e-16 90.5 48 89.6
Aa31LG2G17280 Aethionema arabicum HOM05D001880 ORTHO05D004730 3.2e-16 89.7 66 68.2
Thhalv10025209m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 3.2e-16 89.7 61 72.1
A08p17950 Brassica napus HOM05D001880 ORTHO05D004730 4.2e-16 89.4 61 70.5
BraA08t33746Z Brassica rapa HOM05D001880 ORTHO05D004730 4.2e-16 89.4 61 70.5
BcaB03g12759 Brassica carinata HOM05D001880 ORTHO05D004730 7.1e-16 88.6 61 70.5
Atru.chr7.2155 Acer truncatum HOM05D001880 ORTHO05D004730 2.2e-12 77.0 61 59.0
Cpa.g.sc78.77 Carica papaya HOM05D001880 ORTHO05D004730 2.8e-12 76.6 61 57.4
Aqoxy7G01616 Aquilegia oxysepala HOM05D001880 ORTHO05D004730 6.3e-12 75.5 78 48.7
CsaV3_2G031070 Cucumis sativus L. HOM05D001880 ORTHO05D004730 8.2e-12 75.1 61 62.3
Lj7C706T10 Lonicera japonica HOM05D001880 ORTHO05D004730 8.2e-12 75.1 61 60.7
THA.LOC104803768 Tarenaya hassleriana HOM05D001880 ORTHO05D004730 8.2e-12 75.1 61 54.1
Ciclev10008260m.g Citrus clementina HOM05D001880 ORTHO05D004730 1.8e-11 73.9 61 57.4
DCAR_003047 Daucus carota HOM05D001880 ORTHO05D004730 1.8e-11 73.9 60 56.7
Manes.03G063200 Manihot esculenta HOM05D001880 ORTHO05D004730 1.8e-11 73.9 61 57.4
MSTRG.25899 Avicennia marina HOM05D001880 ORTHO05D004730 2.4e-11 73.6 61 57.4
Gorai.002G178100 Gossypium raimondii HOM05D001880 ORTHO05D004730 2.4e-11 73.6 80 48.8
Phvul.001G061100 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 2.4e-11 73.6 60 58.3
Thecc.09G040300 Theobroma cacao HOM05D001880 ORTHO05D004730 2.4e-11 73.6 78 51.3
MELO3C011157.2 Cucumis melo HOM05D001880 ORTHO05D004730 3.1e-11 73.2 61 60.7
Gohir.D01G144201 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.1e-11 73.2 57 61.4
Peaxi162Scf00523g00112 Petunia axillaris HOM05D001880 ORTHO05D004730 3.1e-11 73.2 61 55.7
Lalb_Chr23g0269481 Lupinus albus HOM05D001880 ORTHO05D004730 4.1e-11 72.8 61 55.7
PGSC0003DMG400010836 Solanum tuberosum HOM05D001880 ORTHO05D004730 4.1e-11 72.8 61 55.7
VMungo0647G0420 Vigna mungo HOM05D001880 ORTHO05D004730 5.3e-11 72.4 61 55.7
Gorai.009G050900 Gossypium raimondii HOM05D001880 ORTHO05D004730 6.9e-11 72.0 78 47.4
Lj1g0005918 Lotus japonicus HOM05D001880 ORTHO05D004730 6.9e-11 72.0 60 55.0
MBI01_g07170_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 6.9e-11 72.0 60 51.7
Nitab4.5_0007240g0020 Nicotiana tabacum HOM05D001880 ORTHO05D004730 6.9e-11 72.0 61 54.1
Sed0010239 Sechium edule HOM05D001880 ORTHO05D004730 6.9e-11 72.0 61 59.0
CAN.G21.30 Capsicum annuum HOM05D001880 ORTHO05D004730 9.0e-11 71.6 61 54.1
TWI32G0570 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 9.0e-11 71.6 61 57.4
TWI63G1191 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 9.0e-11 71.6 61 57.4
TAR626G0413 Trochodendron aralioides HOM05D001880 ORTHO05D004730 9.0e-11 71.6 61 57.4
COL.COLO4_30423 Corchorus olitorius HOM05D001880 ORTHO05D004730 1.2e-10 71.2 60 53.3
PGR031G0301 Punica granatum HOM05D001880 ORTHO05D004730 1.2e-10 71.2 61 50.8
GSVIVG01035689001 Vitis vinifera HOM05D001880 ORTHO05D004730 1.2e-10 71.2 61 57.4
Gohir.D05G049600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.5e-10 70.9 78 46.2
Manes.16G069051 Manihot esculenta HOM05D001880 ORTHO05D004730 1.5e-10 70.9 61 55.7
Nitab4.5_0000052g0190 Nicotiana tabacum HOM05D001880 ORTHO05D004730 1.5e-10 70.9 60 55.0
vmacro11077 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 1.5e-10 70.9 61 57.4
GSVIVG01035666001 Vitis vinifera HOM05D001880 ORTHO05D004730 1.5e-10 70.9 61 55.7
ATR0315G050 Amborella trichopoda HOM05D001880 ORTHO05D004730 2.0e-10 70.5 61 50.8
Duzib168G0571 Durio zibethinus HOM05D001880 ORTHO05D004730 2.0e-10 70.5 47 70.2
Oeu012185.1 Olea europaea HOM05D001880 ORTHO05D004730 2.0e-10 70.5 61 54.1
Cc08_g09020 Coffea canephora HOM05D001880 ORTHO05D004730 2.6e-10 70.1 61 52.5
Dinv14229 Davidia involucrata HOM05D001880 ORTHO05D004730 2.6e-10 70.1 61 55.7
Prupe.1G452100 Prunus persica HOM05D001880 ORTHO05D004730 2.6e-10 70.1 61 54.1
Sed0005261 Sechium edule HOM05D001880 ORTHO05D004730 2.6e-10 70.1 54 63.0
Sc24g0001330 Simmondsia chinensis HOM05D001880 ORTHO05D004730 2.6e-10 70.1 61 54.1
Solyc08g068310.3 Solanum lycopersicum HOM05D001880 ORTHO05D004730 2.6e-10 70.1 61 52.5
Hma1.2p1_0140F.1_g063490 Hydrangea macrophylla HOM05D001880 ORTHO05D004730 3.4e-10 69.7 61 54.1
Manes.04G129200 Manihot esculenta HOM05D001880 ORTHO05D004730 3.4e-10 69.7 61 49.2
Psat6g035680 Pisum sativum HOM05D001880 ORTHO05D004730 3.4e-10 69.7 60 51.7
Sopen08g022160 Solanum pennellii HOM05D001880 ORTHO05D004730 3.4e-10 69.7 61 52.5
arahy.Tifrunner.gnm1.ann1.I11X1M Arachis hypogaea HOM05D001880 ORTHO05D004730 4.5e-10 69.3 60 55.0
ClCG08G012380 Citrullus lanatus HOM05D001880 ORTHO05D004730 4.5e-10 69.3 61 57.4
PSO210G2288 Papaver somniferum HOM05D001880 ORTHO05D004730 4.5e-10 69.3 60 53.3
Rhsim02G0181700 Rhododendron simsii HOM05D001880 ORTHO05D004730 4.5e-10 69.3 61 55.7
arahy.Tifrunner.gnm1.ann1.KUD1W7 Arachis hypogaea HOM05D001880 ORTHO05D004730 5.9e-10 68.9 60 55.0
CANSAT25G1999 Cannabis sativa HOM05D001880 ORTHO05D004730 5.9e-10 68.9 60 56.7
Duzib150G1399 Durio zibethinus HOM05D001880 ORTHO05D004730 5.9e-10 68.9 78 47.4
Gohir.A05G048100 Gossypium hirsutum HOM05D001880 ORTHO05D004730 5.9e-10 68.9 78 46.2
HanXRQChr07g0190061 Helianthus annuus HOM05D001880 ORTHO05D004730 5.9e-10 68.9 107 40.2
Nn5g30497 Nelumbo nucifera HOM05D001880 ORTHO05D004730 5.9e-10 68.9 107 38.3
SGA_v2.0_scaffold185G40074 Striga asiatica HOM05D001880 ORTHO05D004730 5.9e-10 68.9 61 54.1
DCAR_007706 Daucus carota HOM05D001880 ORTHO05D004730 7.7e-10 68.6 60 51.7
MD08G1117800 Malus domestica HOM05D001880 ORTHO05D004730 7.7e-10 68.6 48 62.5
PSO782G2488 Papaver somniferum HOM05D001880 ORTHO05D004730 7.7e-10 68.6 48 60.4
PSO832G4225 Papaver somniferum HOM05D001880 ORTHO05D004730 7.7e-10 68.6 48 60.4
HPP92_013605 Vanilla planifolia HOM05D001880 ORTHO05D004730 7.7e-10 68.6 61 57.4
Actinidia31224 Actinidia chinensis HOM05D001880 ORTHO05D004730 1.0e-09 68.2 60 55.0
Migut.A00234 Erythranthe guttata HOM05D001880 ORTHO05D004730 1.0e-09 68.2 60 55.0
Glyma.17G190500 Glycine max HOM05D001880 ORTHO05D004730 1.0e-09 68.2 60 53.3
Gohir.D10G119600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.0e-09 68.2 78 44.9
Gorai.011G131400 Gossypium raimondii HOM05D001880 ORTHO05D004730 1.0e-09 68.2 78 44.9
Lsat_1_v5_gn_5_33160 Lactuca sativa HOM05D001880 ORTHO05D004730 1.0e-09 68.2 61 54.1
CDE05G2503 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 1.3e-09 67.8 60 48.3
Dinv30257 Davidia involucrata HOM05D001880 ORTHO05D004730 1.3e-09 67.8 48 60.4
FvH4_2g36050 Fragaria vesca HOM05D001880 ORTHO05D004730 1.3e-09 67.8 61 50.8
FAN15G1328 Fragaria x ananassa HOM05D001880 ORTHO05D004730 1.3e-09 67.8 61 50.8
FAN27G3372 Fragaria x ananassa HOM05D001880 ORTHO05D004730 1.3e-09 67.8 61 50.8
MD15G1097300 Malus domestica HOM05D001880 ORTHO05D004730 1.3e-09 67.8 48 60.4
PSO210G1470 Papaver somniferum HOM05D001880 ORTHO05D004730 1.3e-09 67.8 60 51.7
Potri.006G241800 Populus trichocarpa HOM05D001880 ORTHO05D004730 1.3e-09 67.8 61 54.1
RcHm_v2.0_Chr6g0305801 Rosa chinensis HOM05D001880 ORTHO05D004730 1.3e-09 67.8 61 50.8
TAR383G0573 Trochodendron aralioides HOM05D001880 ORTHO05D004730 1.3e-09 67.8 107 38.3
Zm00001eb425750 Zea mays HOM05D001880 ORTHO05D004730 1.3e-09 67.8 60 55.0
CDE05G1114 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 1.7e-09 67.4 47 57.4
Thhalv10018639m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 1.7e-09 67.4 60 51.7
Medtr1g026890 Medicago truncatula HOM05D001880 ORTHO05D004730 1.7e-09 67.4 60 51.7
Sp5g35890 Schrenkiella parvula HOM05D001880 ORTHO05D004730 1.7e-09 67.4 60 50.0
CSS0018831 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D004730 2.2e-09 67.0 61 54.1
CARHR074610 Cardamine hirsuta HOM05D001880 ORTHO05D004730 2.2e-09 67.0 60 50.0
Eucgr.C01584 Eucalyptus grandis HOM05D001880 ORTHO05D004730 2.2e-09 67.0 48 60.4
Potri.018G037900 Populus trichocarpa HOM05D001880 ORTHO05D004730 2.2e-09 67.0 47 61.7
SHI18622 Sapria himalayana HOM05D001880 ORTHO05D004730 2.2e-09 67.0 61 52.5
Aa31LG4G170 Aethionema arabicum HOM05D001880 ORTHO05D004730 2.9e-09 66.6 60 48.3
Lj8C597T6 Lonicera japonica HOM05D001880 ORTHO05D004730 2.9e-09 66.6 48 62.5
Lj8C602G7 Lonicera japonica HOM05D001880 ORTHO05D004730 2.9e-09 66.6 48 62.5
Sabra06G0189200 Salix brachista HOM05D001880 ORTHO05D004730 2.9e-09 66.6 61 54.1
AL2G41680 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 3.8e-09 66.2 60 51.7
Glyma.04G080500 Glycine max HOM05D001880 ORTHO05D004730 3.8e-09 66.2 47 59.6
MBI04_g19165_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 3.8e-09 66.2 60 50.0
SEGI_31507 Sequoiadendron giganteum HOM05D001880 ORTHO05D004730 3.8e-09 66.2 46 63.0
TPR.G20025 Trifolium pratense HOM05D001880 ORTHO05D004730 3.8e-09 66.2 60 51.7
CANSAT56G0393 Cannabis sativa HOM05D001880 ORTHO05D004730 5.0e-09 65.9 60 50.0
Ca_12729_v3 Cicer arietinum L. HOM05D001880 ORTHO05D004730 5.0e-09 65.9 60 50.0
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 6.5e-09 65.5 107 37.4
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 6.5e-09 65.5 47 59.6
Hund03438 Selenicereus undatus HOM05D001880 ORTHO05D004730 8.5e-09 65.1 57 56.1
Ah.16g105290 Amaranthus hybridus HOM05D001880 ORTHO05D004730 1.1e-08 64.7 61 50.8
AT1G79880 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 1.1e-08 64.7 60 50.0
Haze_21861 Corylus avellana HOM05D001880 ORTHO05D004730 1.1e-08 64.7 60 50.0
QL12p026586 Quercus lobata HOM05D001880 ORTHO05D004730 1.9e-08 63.9 60 50.0
CiPaw.08G023900 Carya illinoinensis HOM05D001880 ORTHO05D004730 2.5e-08 63.5 60 50.0
AUR62023013 Chenopodium quinoa HOM05D001880 ORTHO05D004730 2.5e-08 63.5 57 52.6
Os02g0610400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D004730 2.5e-08 63.5 47 55.3
SalBow4G1753 Salvia bowleyana HOM05D001880 ORTHO05D004730 2.5e-08 63.5 61 49.2
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 4.2e-08 62.8 60 48.3
Phvul.009G106600 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 4.2e-08 62.8 46 58.7
AUR62009326 Chenopodium quinoa HOM05D001880 ORTHO05D004730 5.5e-08 62.4 57 50.9
Gohir.A07G023700 Gossypium hirsutum HOM05D001880 ORTHO05D004730 5.5e-08 62.4 78 42.3
Gorai.001G028400 Gossypium raimondii HOM05D001880 ORTHO05D004730 5.5e-08 62.4 210 27.1
BcaNung07152 Brassica carinata HOM05D001880 ORTHO05D004730 7.2e-08 62.0 107 33.6
A07p26390 Brassica napus HOM05D001880 ORTHO05D004730 7.2e-08 62.0 107 32.7
C06p28780 Brassica napus HOM05D001880 ORTHO05D004730 7.2e-08 62.0 107 33.6
BolC6t38048H Brassica oleracea HOM05D001880 ORTHO05D004730 7.2e-08 62.0 107 33.6
BraA07t30283Z Brassica rapa HOM05D001880 ORTHO05D004730 7.2e-08 62.0 107 32.7
COL.COLO4_18692 Corchorus olitorius HOM05D001880 ORTHO05D004730 9.4e-08 61.6 78 39.7
Glyma.06G082200 Glycine max HOM05D001880 ORTHO05D004730 9.4e-08 61.6 46 56.5
BcaC08g45275 Brassica carinata HOM05D001880 ORTHO05D004730 1.2e-07 61.2 107 33.6
Gohir.D07G027300 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.6e-07 60.8 210 26.7
Zm00001eb246770 Zea mays HOM05D001880 ORTHO05D004730 1.6e-07 60.8 60 48.3


User provided reference genes

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