Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 4.9e-103 377.9 198 100.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.7e-77 292.4 156 96.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.9e-77 290.8 156 95.5
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 7.9e-77 290.8 156 95.5
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.9e-75 286.2 156 94.9
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.8e-74 281.6 156 92.9
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-73 279.3 156 92.3
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 2.4e-73 279.3 156 92.3
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.0e-73 278.5 156 91.7
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.2e-72 276.9 156 91.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.2e-72 276.9 156 91.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.3e-68 263.5 156 87.2
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.3e-68 263.5 156 87.2
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 5.1e-68 261.5 156 87.2
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 5.1e-68 261.5 156 87.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 6.7e-68 261.2 156 85.9
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.9e-63 245.7 155 83.2
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.0e-60 237.3 156 78.2
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 2.2e-55 219.5 150 73.3
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.9e-55 219.2 153 75.8
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 6.1e-53 211.5 111 97.3
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.3e-52 209.5 156 72.4
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.4e-49 200.3 152 63.2
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.6e-48 196.1 158 65.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.9e-47 192.6 153 65.4
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 6.5e-47 191.4 159 64.8
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-46 190.3 126 79.4
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.9e-46 189.9 155 61.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.2e-46 189.1 126 79.4
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 7.2e-46 188.0 155 62.6
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.2e-45 187.2 126 78.6
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.2e-45 187.2 153 62.7
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.2e-45 187.2 154 62.3
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.1e-45 186.4 156 59.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 2.1e-45 186.4 153 62.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 3.6e-45 185.7 155 61.3
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 4.6e-45 185.3 154 60.4
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 4.6e-45 185.3 147 62.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 6.1e-45 184.9 153 62.1
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 6.1e-45 184.9 147 65.3
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.0e-44 184.1 153 62.1
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.0e-44 184.1 155 62.6
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.4e-44 183.7 152 61.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.8e-44 183.3 162 59.9
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-44 183.3 153 62.7
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.8e-44 183.3 153 61.4
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.3e-44 183.0 152 61.8
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.3e-44 183.0 147 63.3
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 2.3e-44 183.0 147 65.3
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.0e-44 182.6 154 61.7
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.0e-44 182.6 152 61.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.0e-44 182.6 152 61.2
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 3.9e-44 182.2 149 63.1
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 3.9e-44 182.2 147 63.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 5.1e-44 181.8 151 60.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.1e-44 181.8 147 62.6
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 8.8e-44 181.0 147 61.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 8.8e-44 181.0 123 70.7
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 8.8e-44 181.0 155 60.6
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 8.8e-44 181.0 158 59.5
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 8.8e-44 181.0 155 61.9
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 8.8e-44 181.0 154 61.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.1e-43 180.6 155 60.6
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.5e-43 180.3 151 59.6
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.5e-43 180.3 137 66.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.5e-43 180.3 123 69.9
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-43 179.9 153 58.8
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.3e-43 179.1 162 59.3
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 5.7e-43 178.3 159 59.7
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.7e-43 178.3 154 59.1
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 7.4e-43 177.9 159 57.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 9.7e-43 177.6 155 61.3
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.7e-43 177.6 153 60.8
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 2.2e-42 176.4 150 62.7
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.2e-42 176.4 152 59.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.2e-42 176.4 154 57.1
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.8e-42 176.0 152 59.2
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.8e-42 176.0 153 60.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.7e-42 175.6 153 58.2
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 6.3e-42 174.9 152 59.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 8.2e-42 174.5 152 59.2
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 8.2e-42 174.5 151 58.3
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.1e-41 174.1 157 59.9
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.1e-41 174.1 158 58.9
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.1e-41 174.1 123 69.1
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.4e-41 173.7 157 59.2
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.4e-41 173.7 147 61.9
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.8e-41 173.3 153 61.4
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.4e-41 172.9 154 56.5
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.1e-41 172.6 152 59.9
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.1e-41 172.6 123 68.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 4.1e-41 172.2 159 57.9
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 4.1e-41 172.2 150 60.7
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 6.9e-41 171.4 156 59.6
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 6.9e-41 171.4 123 67.5
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 6.9e-41 171.4 123 67.5
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 9.1e-41 171.0 152 58.6
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.2e-40 170.6 153 57.5
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-40 170.2 150 59.3
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.0e-40 169.9 123 63.4
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.6e-40 169.5 153 58.8
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 3.4e-40 169.1 154 59.1
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.3e-39 167.2 155 58.1
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.7e-39 166.8 123 64.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 3.8e-39 165.6 157 56.1
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 5.0e-39 165.2 120 65.0
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 5.0e-39 165.2 154 55.2
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 5.0e-39 165.2 134 62.7
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 6.5e-39 164.9 121 63.6
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 6.5e-39 164.9 154 57.1
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.4e-38 163.7 156 55.1
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 2.5e-38 162.9 123 62.6
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.5e-38 162.9 152 55.3
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 3.2e-38 162.5 123 62.6
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 3.6e-37 159.1 153 54.2
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.8e-36 156.8 150 53.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 2.3e-36 156.4 151 55.0
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 3.7e-34 149.1 127 54.3
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 7.0e-33 144.8 130 52.3
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 7.7e-32 141.4 156 50.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-29 134.0 102 62.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-29 134.0 102 62.7
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 3.0e-28 129.4 147 49.0
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 8.8e-28 127.9 132 48.5
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-25 120.9 82 67.1
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 3.5e-24 115.9 82 64.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.5e-22 108.6 143 43.4
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 9.4e-22 107.8 108 49.1
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.6e-21 105.9 109 48.6
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 3.6e-21 105.9 150 40.7
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.2e-19 100.9 111 43.2
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 4.4e-19 99.0 105 50.5
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.2e-16 90.9 141 39.0
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.7e-16 89.7 60 70.0
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.9e-15 86.3 63 73.0
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.9e-14 83.6 48 79.2
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 9.4e-14 81.3 49 71.4
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 5.2e-12 75.5 47 80.9
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.4e-11 72.8 54 61.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 4.4e-11 72.4 49 65.3
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 9.2e-09 64.7 40 75.0


User provided reference genes

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