Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p61250 Brassica napus HOM05D000104 ORTHO05D022031 3.3e-43 177.9 88 100.0
BcaC09g47872 Brassica carinata HOM05D000104 ORTHO05D006391 7.6e-32 140.2 86 84.9
BolC1t05642H Brassica oleracea HOM05D000104 ORTHO05D006391 7.6e-32 140.2 86 84.9
BraA01t04455Z Brassica rapa HOM05D000104 ORTHO05D006391 9.9e-32 139.8 86 84.9
CARHR080510 Cardamine hirsuta HOM05D000104 ORTHO05D006391 1.7e-31 139.0 86 84.9
Thhalv10019947m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 2.2e-31 138.7 86 83.7
Sp3g04950 Schrenkiella parvula HOM05D000104 ORTHO05D006391 1.1e-30 136.3 86 82.6
Carub.0003s0543 Capsella rubella HOM05D000104 ORTHO05D006391 4.2e-30 134.4 86 81.4
AL3G16830 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 3.5e-29 131.3 86 80.2
AT3G06010 Arabidopsis thaliana HOM05D000104 ORTHO05D006391 4.6e-29 131.0 86 79.1
Carub.0006s1764 Capsella rubella HOM05D000104 ORTHO05D006391 2.8e-26 121.7 86 70.9
AL6G30790 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 4.8e-26 120.9 86 73.3
AT5G19310 Arabidopsis thaliana HOM05D000104 ORTHO05D006391 6.2e-26 120.6 86 74.4
Aa31LG5G16490 Aethionema arabicum HOM05D000104 ORTHO05D006391 2.4e-25 118.6 86 72.1
Sp6g25110 Schrenkiella parvula HOM05D000104 ORTHO05D006391 2.4e-25 118.6 86 70.9
THA.LOC104818783 Tarenaya hassleriana HOM05D000104 ORTHO05D006391 4.0e-25 117.9 84 73.8
Thhalv10015665m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 1.2e-24 116.3 86 68.6
CARHR193660 Cardamine hirsuta HOM05D000104 ORTHO05D006391 1.5e-24 115.9 86 68.6
Cpa.g.sc1278.1 Carica papaya HOM05D000104 ORTHO05D006391 6.5e-23 110.5 83 65.1
Rhsim02G0022300 Rhododendron simsii HOM05D000104 ORTHO05D006391 8.4e-23 110.2 74 73.0
MELO3C014493.2 Cucumis melo HOM05D000104 ORTHO05D006391 3.2e-22 108.2 84 64.3
CsaV3_6G038290 Cucumis sativus L. HOM05D000104 ORTHO05D006391 4.2e-22 107.8 84 65.5
Dinv44505 Davidia involucrata HOM05D000104 ORTHO05D006391 4.2e-22 107.8 80 65.0
GSVIVG01017921001 Vitis vinifera HOM05D000104 ORTHO05D006391 4.2e-22 107.8 86 61.6
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 5.5e-22 107.5 74 70.3
TWI73G0072 Tripterygium wilfordii HOM05D000104 ORTHO05D006391 7.1e-22 107.1 74 74.3
Haze_00933 Corylus avellana HOM05D000104 ORTHO05D006391 9.3e-22 106.7 74 70.3
Cc03_g03400 Coffea canephora HOM05D000104 ORTHO05D006391 1.2e-21 106.3 86 61.6
Actinidia23492 Actinidia chinensis HOM05D000104 ORTHO05D006391 1.6e-21 105.9 72 70.8
Actinidia40166 Actinidia chinensis HOM05D000104 ORTHO05D006391 1.6e-21 105.9 72 70.8
Prupe.1G154600 Prunus persica HOM05D000104 ORTHO05D006391 2.1e-21 105.5 71 73.2
CiPaw.01G162800 Carya illinoinensis HOM05D000104 ORTHO05D006391 2.7e-21 105.1 74 68.9
CANSAT78G1321 Cannabis sativa HOM05D000104 ORTHO05D006391 4.6e-21 104.4 86 62.8
QL06p003521 Quercus lobata HOM05D000104 ORTHO05D006391 4.6e-21 104.4 74 67.6
Cfa015609 Carpinus fangiana HOM05D000104 ORTHO05D006391 6.1e-21 104.0 74 67.6
ClCG06G005980 Citrullus lanatus HOM05D000104 ORTHO05D006391 6.1e-21 104.0 84 61.9
DCAR_002397 Daucus carota HOM05D000104 ORTHO05D006391 6.1e-21 104.0 86 60.5
Eucgr.B01100 Eucalyptus grandis HOM05D000104 ORTHO05D006391 6.1e-21 104.0 86 60.5
Glyma.10G250500 Glycine max HOM05D000104 ORTHO05D006391 7.9e-21 103.6 74 70.3
Glyma.20G143200 Glycine max HOM05D000104 ORTHO05D006391 7.9e-21 103.6 74 70.3
Lj3A741T68 Lonicera japonica HOM05D000104 ORTHO05D006391 7.9e-21 103.6 74 68.9
MD13G1186900 Malus domestica HOM05D000104 ORTHO05D006391 7.9e-21 103.6 71 71.8
vmacro15323 Vaccinium macrocarpon HOM05D000104 ORTHO05D006391 7.9e-21 103.6 74 67.6
arahy.Tifrunner.gnm1.ann1.6R1BCK Arachis hypogaea HOM05D000104 ORTHO05D006391 1.0e-20 103.2 74 67.6
arahy.Tifrunner.gnm1.ann1.CDG6HX Arachis hypogaea HOM05D000104 ORTHO05D006391 1.0e-20 103.2 74 67.6
arahy.Tifrunner.gnm1.ann1.JYJ007 Arachis hypogaea HOM05D000104 ORTHO05D006391 1.0e-20 103.2 77 68.8
EL10As3g23347 Beta vulgaris HOM05D000104 ORTHO05D006391 1.3e-20 102.8 86 57.0
CiPaw.02G094700 Carya illinoinensis HOM05D000104 ORTHO05D006391 1.3e-20 102.8 74 66.2
MD16G1187800 Malus domestica HOM05D000104 ORTHO05D006391 1.3e-20 102.8 71 71.8
Phvul.007G054000 Phaseolus vulgaris HOM05D000104 ORTHO05D006391 1.3e-20 102.8 81 67.9
Atru.chr4.2520 Acer truncatum HOM05D000104 ORTHO05D006391 1.8e-20 102.4 86 59.3
DCAR_027167 Daucus carota HOM05D000104 ORTHO05D006391 1.8e-20 102.4 74 67.6
Dinv38416 Davidia involucrata HOM05D000104 ORTHO05D006391 1.8e-20 102.4 86 59.3
VMungo0720G1811 Vigna mungo HOM05D000104 ORTHO05D006391 1.8e-20 102.4 74 70.3
Rhsim04G0204200 Rhododendron simsii HOM05D000104 ORTHO05D006391 2.3e-20 102.1 74 66.2
Ah.04g154480 Amaranthus hybridus HOM05D000104 ORTHO05D006391 3.0e-20 101.7 86 58.1
Glyma.11G004100 Glycine max HOM05D000104 ORTHO05D006391 3.0e-20 101.7 74 68.9
TAR636G2934 Trochodendron aralioides HOM05D000104 ORTHO05D006391 3.0e-20 101.7 74 64.9
MSTRG.10001 Avicennia marina HOM05D000104 ORTHO05D006391 3.9e-20 101.3 80 62.5
Nn4g26250 Nelumbo nucifera HOM05D000104 ORTHO05D006391 3.9e-20 101.3 72 68.1
Hund12165 Selenicereus undatus HOM05D000104 ORTHO05D006391 3.9e-20 101.3 66 74.2
Lalb_Chr02g0144671 Lupinus albus HOM05D000104 ORTHO05D006391 5.1e-20 100.9 72 66.7
arahy.Tifrunner.gnm1.ann1.I4QQIE Arachis hypogaea HOM05D000104 ORTHO05D006391 6.7e-20 100.5 77 66.2
Ca_24384_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006391 6.7e-20 100.5 74 67.6
Lsat_1_v5_gn_7_66780 Lactuca sativa HOM05D000104 ORTHO05D006391 6.7e-20 100.5 73 65.8
Oeu034364.1 Olea europaea HOM05D000104 ORTHO05D006391 6.7e-20 100.5 66 74.2
Sed0009592 Sechium edule HOM05D000104 ORTHO05D006391 6.7e-20 100.5 74 66.2
TPR.G37980 Trifolium pratense HOM05D000104 ORTHO05D006391 6.7e-20 100.5 74 68.9
AUR62038085 Chenopodium quinoa HOM05D000104 ORTHO05D006391 8.7e-20 100.1 86 55.8
AUR62038161 Chenopodium quinoa HOM05D000104 ORTHO05D006391 8.7e-20 100.1 86 55.8
Lj1g0024868 Lotus japonicus HOM05D000104 ORTHO05D006391 8.7e-20 100.1 74 70.3
Solyc01g079690.4 Solanum lycopersicum HOM05D000104 ORTHO05D006391 8.7e-20 100.1 72 66.7
Sopen01g031470 Solanum pennellii HOM05D000104 ORTHO05D006391 8.7e-20 100.1 72 66.7
HanXRQChr09g0247251 Helianthus annuus HOM05D000104 ORTHO05D006391 1.1e-19 99.8 73 65.8
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 1.1e-19 99.8 74 64.9
Nitab4.5_0000144g0090 Nicotiana tabacum HOM05D000104 ORTHO05D006391 1.1e-19 99.8 72 66.7
Nitab4.5_0000180g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006391 1.1e-19 99.8 72 66.7
Medtr5g005840 Medicago truncatula HOM05D000104 ORTHO05D006391 1.5e-19 99.4 74 67.6
Psat6g209840 Pisum sativum HOM05D000104 ORTHO05D006391 1.5e-19 99.4 77 66.2
Lj5g0020197 Lotus japonicus HOM05D000104 ORTHO05D006391 1.9e-19 99.0 74 66.2
Psat4g211240 Pisum sativum HOM05D000104 ORTHO05D006391 1.9e-19 99.0 74 67.6
PGR142G0455 Punica granatum HOM05D000104 ORTHO05D006391 1.9e-19 99.0 74 66.2
Manes.15G026000 Manihot esculenta HOM05D000104 ORTHO05D006391 2.5e-19 98.6 85 60.0
MSTRG.4011 Avicennia marina HOM05D000104 ORTHO05D006391 3.3e-19 98.2 65 72.3
Oeu042797.1 Olea europaea HOM05D000104 ORTHO05D006391 3.3e-19 98.2 65 72.3
Sabra10G0052000 Salix brachista HOM05D000104 ORTHO05D006391 3.3e-19 98.2 74 67.6
SGA_v2.0_scaffold39G15292 Striga asiatica HOM05D000104 ORTHO05D006391 3.3e-19 98.2 80 61.2
RcHm_v2.0_Chr4g0417121 Rosa chinensis HOM05D000104 ORTHO05D006391 4.3e-19 97.8 67 74.6
CAN.G69.9 Capsicum annuum HOM05D000104 ORTHO05D006391 5.7e-19 97.4 67 70.1
CDE04G0057 Ceratophyllum demersum HOM05D000104 ORTHO05D006391 5.7e-19 97.4 74 63.5
FvH4_4g14970 Fragaria vesca HOM05D000104 ORTHO05D006391 7.4e-19 97.1 67 74.6
FAN07G1560 Fragaria x ananassa HOM05D000104 ORTHO05D006391 7.4e-19 97.1 67 74.6
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 7.4e-19 97.1 67 74.6
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 7.4e-19 97.1 67 74.6
Potri.010G091200 Populus trichocarpa HOM05D000104 ORTHO05D006391 7.4e-19 97.1 74 66.2
HanXRQChr09g0247211 Helianthus annuus HOM05D000104 ORTHO05D006391 9.7e-19 96.7 73 64.4
Sabra08G0114000 Salix brachista HOM05D000104 ORTHO05D006391 1.3e-18 96.3 74 64.9
SEGI_40932 Sequoiadendron giganteum HOM05D000104 ORTHO05D006391 1.3e-18 96.3 76 63.2
Medtr1g105050 Medicago truncatula HOM05D000104 ORTHO05D006391 1.6e-18 95.9 72 65.3
HPP92_009640 Vanilla planifolia HOM05D000104 ORTHO05D022031 2.2e-18 95.5 82 59.8
Ca_10932_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006391 2.8e-18 95.1 77 63.6
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 2.8e-18 95.1 67 73.1
Migut.G00313 Erythranthe guttata HOM05D000104 ORTHO05D006391 4.8e-18 94.4 65 70.8
unitig_749.g14068 Utricularia gibba HOM05D000104 ORTHO05D006391 4.8e-18 94.4 74 66.2
Nn1g02228 Nelumbo nucifera HOM05D000104 ORTHO05D006391 6.3e-18 94.0 72 61.1
SHI00411 Sapria himalayana HOM05D000104 ORTHO05D006391 6.3e-18 94.0 85 61.2
ATR0626G379 Amborella trichopoda HOM05D000104 ORTHO05D006391 8.2e-18 93.6 81 54.3
Aqoxy1G03114 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 8.2e-18 93.6 65 66.2
Potri.008G149900 Populus trichocarpa HOM05D000104 ORTHO05D006391 8.2e-18 93.6 74 63.5
Thecc.04G226600 Theobroma cacao HOM05D000104 ORTHO05D006391 8.2e-18 93.6 74 68.9
Manes.03G181600 Manihot esculenta HOM05D000104 ORTHO05D006391 1.1e-17 93.2 72 66.7
Duzib151G0379 Durio zibethinus HOM05D000104 ORTHO05D006391 1.4e-17 92.8 65 72.3
Gohir.A10G118000 Gossypium hirsutum HOM05D000104 ORTHO05D006391 1.4e-17 92.8 74 64.9
Gohir.D10G148800 Gossypium hirsutum HOM05D000104 ORTHO05D006391 1.4e-17 92.8 74 64.9
Gorai.011G166100 Gossypium raimondii HOM05D000104 ORTHO05D006391 1.4e-17 92.8 74 64.9
RcHm_v2.0_Chr4g0417031 Rosa chinensis HOM05D000104 ORTHO05D022031 1.4e-17 92.8 67 71.6
PSO170G0309 Papaver somniferum HOM05D000104 ORTHO05D006391 4.1e-17 91.3 74 62.2
PSO302G0005 Papaver somniferum HOM05D000104 ORTHO05D006391 4.1e-17 91.3 74 62.2
Peaxi162Scf00437g00634 Petunia axillaris HOM05D000104 ORTHO05D006391 4.1e-17 91.3 72 66.7
Aqoxy2G03333 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 1.2e-16 89.7 76 55.3
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.2e-16 89.7 65 64.6
Duzib212G0338 Durio zibethinus HOM05D000104 ORTHO05D006391 1.2e-16 89.7 71 64.8
COL.COLO4_06204 Corchorus olitorius HOM05D000104 ORTHO05D006391 2.0e-16 89.0 81 60.5
PSO566G0247 Papaver somniferum HOM05D000104 ORTHO05D006391 2.6e-16 88.6 74 59.5
SMO141G0237 Selaginella moellendorffii HOM05D000104 ORTHO05D006391 3.4e-16 88.2 70 64.3
Os05g0144300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006391 1.3e-15 86.3 67 58.2
AagrBONN_evm.TU.Sc2ySwM_117.613 Anthoceros agrestis HOM05D000104 ORTHO05D006391 8.5e-15 83.6 65 66.2
VMungo1383G3534 Vigna mungo HOM05D000104 ORTHO05D031591 8.5e-15 83.6 69 60.9
CBR_g29561 Chara braunii HOM05D000104 ORTHO05D006391 2.5e-14 82.0 72 59.7
Zm00001eb108690 Zea mays HOM05D000104 ORTHO05D006391 2.5e-14 82.0 67 58.2
Pp3c27_3890 Physcomitrium patens HOM05D000104 ORTHO05D006391 3.2e-14 81.6 73 56.2
Mapoly0030s0101 Marchantia polymorpha HOM05D000104 ORTHO05D006391 2.1e-13 79.0 70 55.7
SalBow2G2646 Salvia bowleyana HOM05D000104 ORTHO05D006391 6.1e-13 77.4 54 63.0
PRCOL_00001825 Prasinoderma coloniale HOM05D000104 ORTHO05D006391 1.1e-06 56.6 76 42.1


User provided reference genes

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