Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p50850 Brassica napus HOM05D002001 ORTHO05D004100 4.0e-102 374.8 192 100.0
C04p25620 Brassica napus HOM05D002001 ORTHO05D004100 1.2e-101 373.2 192 99.5
BolC4t24247H Brassica oleracea HOM05D002001 ORTHO05D004100 3.5e-98 361.7 186 98.4
BcaC02g10597 Brassica carinata HOM05D002001 ORTHO05D004100 1.5e-85 319.7 202 83.7
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 7.6e-85 317.4 230 75.2
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 7.6e-85 317.4 230 75.2
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 7.6e-85 317.4 230 75.2
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 9.9e-85 317.0 230 74.8
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 2.9e-84 315.5 230 74.8
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 2.9e-84 315.5 230 74.8
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 3.2e-83 312.0 230 73.0
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 6.0e-82 307.8 230 72.6
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 3.9e-81 305.1 230 73.0
Aa31LG2G9570 Aethionema arabicum HOM05D002001 ORTHO05D004100 1.1e-80 303.5 230 72.2
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 1.1e-80 303.5 230 71.7
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 1.9e-80 302.8 230 71.3
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 1.8e-78 296.2 230 69.6
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 1.9e-75 286.2 230 67.8
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 3.2e-75 285.4 230 66.5
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 5.5e-75 284.6 230 66.1
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 7.1e-75 284.3 229 67.2
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 1.2e-74 283.5 230 65.7
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 1.2e-74 283.5 230 65.7
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 1.2e-74 283.5 230 65.7
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 1.0e-73 280.4 230 65.2
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 1.0e-73 280.4 230 64.3
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 3.0e-73 278.9 230 65.2
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 3.0e-73 278.9 230 65.2
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 3.9e-73 278.5 231 64.9
Cpa.g.sc118.41 Carica papaya HOM05D002001 ORTHO05D004100 5.1e-73 278.1 230 65.7
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 5.1e-73 278.1 230 64.8
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 1.9e-72 276.2 230 64.8
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 7.4e-72 274.2 230 64.8
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 3.7e-71 271.9 230 63.5
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 1.1e-70 270.4 230 61.3
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 1.1e-70 270.4 230 62.6
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 2.4e-70 269.2 230 62.6
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 2.4e-70 269.2 230 61.7
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 3.1e-70 268.9 232 62.5
Hma1.2p1_2522F.1_g323890 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 4.0e-70 268.5 230 63.5
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 4.0e-70 268.5 230 62.6
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 6.9e-70 267.7 230 63.9
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 9.0e-70 267.3 230 63.5
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 1.5e-69 266.5 230 60.9
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 1.5e-69 266.5 229 62.4
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 2.0e-69 266.2 230 62.6
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 2.0e-69 266.2 230 62.2
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 3.4e-69 265.4 230 62.6
Hma1.2p1_2522F.1_g323860 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 3.4e-69 265.4 230 62.2
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 3.4e-69 265.4 230 62.2
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 1.3e-68 263.5 231 62.3
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 1.3e-68 263.5 230 60.0
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 1.7e-68 263.1 230 60.9
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 2.2e-68 262.7 230 60.9
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 2.9e-68 262.3 230 60.4
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.8e-68 261.9 230 61.7
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 4.9e-68 261.5 229 61.6
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 8.4e-68 260.8 230 60.9
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 1.1e-67 260.4 230 60.9
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 2.5e-67 259.2 229 60.7
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 2.5e-67 259.2 230 59.6
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 3.2e-67 258.8 229 60.7
Haze_01808 Corylus avellana HOM05D002001 ORTHO05D004100 4.2e-67 258.5 230 60.0
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 7.1e-67 257.7 228 62.3
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 7.1e-67 257.7 230 59.6
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 9.3e-67 257.3 230 60.9
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 9.3e-67 257.3 230 58.7
CsaV3_5G029980 Cucumis sativus L. HOM05D002001 ORTHO05D004100 9.3e-67 257.3 230 58.7
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 9.3e-67 257.3 229 59.4
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 1.6e-66 256.5 229 58.5
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 2.1e-66 256.1 230 58.7
MELO3C027241.2 Cucumis melo HOM05D002001 ORTHO05D004100 2.7e-66 255.8 230 58.3
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 2.7e-66 255.8 233 59.7
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 3.5e-66 255.4 230 58.3
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 3.5e-66 255.4 224 59.4
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 3.5e-66 255.4 230 60.0
Prupe.1G574900 Prunus persica HOM05D002001 ORTHO05D004100 4.6e-66 255.0 230 60.4
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 4.6e-66 255.0 231 58.0
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 6.0e-66 254.6 229 59.0
CAN.G290.19 Capsicum annuum HOM05D002001 ORTHO05D004100 6.0e-66 254.6 229 58.5
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 6.0e-66 254.6 230 57.8
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 6.0e-66 254.6 230 60.4
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 6.0e-66 254.6 237 58.2
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 7.9e-66 254.2 230 58.7
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 7.9e-66 254.2 229 58.5
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 7.9e-66 254.2 229 58.5
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.0e-65 253.8 230 58.7
Glyma.12G168900 Glycine max HOM05D002001 ORTHO05D004100 1.3e-65 253.4 237 58.6
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 1.3e-65 253.4 230 59.6
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 1.3e-65 253.4 229 58.5
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 1.8e-65 253.1 230 59.1
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 2.3e-65 252.7 230 59.6
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 3.0e-65 252.3 237 58.2
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 3.9e-65 251.9 229 58.1
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 3.9e-65 251.9 230 58.7
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 5.1e-65 251.5 231 63.6
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 8.7e-65 250.8 230 60.0
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 8.7e-65 250.8 229 58.1
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 8.7e-65 250.8 230 58.7
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 8.7e-65 250.8 230 57.8
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 1.5e-64 250.0 237 57.4
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 1.5e-64 250.0 237 57.4
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 1.5e-64 250.0 230 60.0
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 1.9e-64 249.6 222 58.1
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 2.5e-64 249.2 230 58.7
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 2.5e-64 249.2 230 60.0
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 3.3e-64 248.8 230 59.6
Aqoxy7G01151 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 4.3e-64 248.4 222 58.1
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 2.8e-63 245.7 230 57.8
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 3.1e-62 242.3 230 57.0
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 1.5e-61 240.0 230 55.7
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 5.9e-61 238.0 230 57.0
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 1.3e-60 236.9 230 56.5
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 1.3e-60 236.9 222 57.2
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 1.3e-60 236.9 228 55.7
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 2.9e-60 235.7 230 53.9
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.9e-60 235.7 230 53.9
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.9e-60 235.7 230 53.9
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 3.8e-60 235.3 213 59.2
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.5e-60 234.6 230 53.5
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.9e-59 233.0 230 53.9
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 1.9e-59 233.0 228 55.7
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 3.6e-58 228.8 241 52.3
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 1.8e-57 226.5 228 53.5
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 1.1e-56 223.8 235 50.2
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 3.3e-56 222.2 235 49.8
SEGI_19065 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 3.3e-56 222.2 211 55.0
SEGI_00225 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 5.7e-56 221.5 211 55.0
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 1.3e-55 220.3 224 54.9
SEGI_30549 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.7e-52 209.9 211 53.6
Nitab4.5_0028330g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 5.0e-52 208.4 226 54.4
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.9e-51 206.5 231 51.9
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 3.6e-50 202.2 187 59.9
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 1.0e-49 200.7 212 48.1
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 2.3e-49 199.5 212 48.6
FvH4_5g28770 Fragaria vesca HOM05D002001 ORTHO05D004100 5.1e-49 198.4 139 70.5
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 1.1e-48 197.2 232 51.3
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 2.0e-48 196.4 212 48.6
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 7.4e-48 194.5 212 46.7
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 1.3e-47 193.7 219 45.7
AagrBONN_evm.TU.Sc2ySwM_228.5774 Anthoceros agrestis HOM05D002001 ORTHO05D004100 1.1e-46 190.7 212 45.8
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 1.4e-46 190.3 228 45.2
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 1.4e-46 190.3 228 45.2
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 7.0e-46 188.0 229 48.5
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 7.0e-46 188.0 229 48.5
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 7.0e-46 188.0 129 76.0
CiPaw.06G144600 Carya illinoinensis HOM05D002001 ORTHO05D004100 2.0e-45 186.4 181 55.2
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 5.9e-45 184.9 187 53.5
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 2.2e-44 183.0 187 51.9
CSS0036640 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 1.4e-43 180.3 191 52.9
FAN13G2793 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.1e-42 174.9 233 44.2
Prupe.I006200 Prunus persica HOM05D002001 ORTHO05D004100 1.8e-38 163.3 170 54.7
COL.COLO4_31914 Corchorus olitorius HOM05D002001 ORTHO05D004100 1.2e-34 150.6 147 58.5
FAN08G2113 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.7e-31 140.2 139 54.7
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 3.5e-29 132.5 155 51.0
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 7.2e-27 124.8 213 34.7
FAN06G3162 Fragaria x ananassa HOM05D002001 ORTHO05D004100 3.4e-24 115.9 154 46.1
FvH4_7g26770 Fragaria vesca HOM05D002001 ORTHO05D004100 9.8e-24 114.4 154 45.5
Haze_26930 Corylus avellana HOM05D002001 ORTHO05D004100 6.3e-23 111.7 237 31.6
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 7.2e-19 98.2 144 38.9
Nitab4.5_0005079g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 2.6e-16 89.7 115 47.8
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 2.4e-14 83.2 145 37.9
GSVIVG01023356001 Vitis vinifera HOM05D002001 ORTHO05D004100 4.1e-14 82.4 61 65.6
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 1.2e-13 80.9 114 43.9
FvH4_7g26760 Fragaria vesca HOM05D002001 ORTHO05D004100 2.3e-12 76.6 57 66.7
FAN06G3093 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.3e-12 76.6 57 66.7
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 5.6e-11 72.0 48 72.9


User provided reference genes

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