Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p48920 Brassica napus HOM05D001546 ORTHO05D008648 2.0e-62 242.3 124 100.0
BcaC02g12229 Brassica carinata HOM05D001546 ORTHO05D008648 1.3e-45 186.4 100 96.0
BcaB02g08944 Brassica carinata HOM05D001546 ORTHO05D002908 2.7e-43 178.7 100 91.0
A05p05300 Brassica napus HOM05D001546 ORTHO05D008648 4.6e-43 177.9 102 91.2
BraA05t19499Z Brassica rapa HOM05D001546 ORTHO05D008648 4.6e-43 177.9 102 91.2
C04p06210 Brassica napus HOM05D001546 ORTHO05D008648 1.8e-42 176.0 109 87.2
Carub.0004s2788 Capsella rubella HOM05D001546 ORTHO05D008648 3.4e-38 161.8 100 83.0
AL4G44380 Arabidopsis lyrata HOM05D001546 ORTHO05D008648 7.7e-38 160.6 100 83.0
CARHR140490 Cardamine hirsuta HOM05D001546 ORTHO05D008648 1.9e-36 156.0 100 79.0
Thhalv10001529m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 4.2e-36 154.8 100 82.0
Sp4g27300 Schrenkiella parvula HOM05D001546 ORTHO05D008648 1.6e-35 152.9 99 78.8
SpUn0031_0020 Schrenkiella parvula HOM05D001546 ORTHO05D008648 1.6e-35 152.9 99 78.8
Thhalv10001556m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 1.4e-34 149.8 108 75.9
AT2G45280 Arabidopsis thaliana HOM05D001546 ORTHO05D008648 3.9e-34 148.3 100 78.0
PGSC0003DMG400007020 Solanum tuberosum HOM05D001546 ORTHO05D008648 3.8e-29 131.7 100 67.0
Nitab4.5_0003912g0060 Nicotiana tabacum HOM05D001546 ORTHO05D008648 5.0e-29 131.3 100 68.0
Cpa.g.sc18.103 Carica papaya HOM05D001546 ORTHO05D008648 6.5e-29 131.0 100 65.0
Sopen05g029430 Solanum pennellii HOM05D001546 ORTHO05D008648 8.5e-29 130.6 100 67.0
TWI14G0061 Tripterygium wilfordii HOM05D001546 ORTHO05D008648 1.1e-28 130.2 100 68.0
Atru.chr5.288 Acer truncatum HOM05D001546 ORTHO05D008648 1.9e-28 129.4 100 68.0
Solyc05g050950.2 Solanum lycopersicum HOM05D001546 ORTHO05D008648 1.9e-28 129.4 101 66.3
Aa31LG1G26810 Aethionema arabicum HOM05D001546 ORTHO05D008648 5.5e-28 127.9 121 61.2
THA.LOC104817238 Tarenaya hassleriana HOM05D001546 ORTHO05D008648 1.2e-27 126.7 104 61.5
Peaxi162Scf00959g00125 Petunia axillaris HOM05D001546 ORTHO05D008648 1.6e-27 126.3 89 73.0
RcHm_v2.0_Chr1g0349941 Rosa chinensis HOM05D001546 ORTHO05D008648 2.1e-27 125.9 100 63.0
Gohir.D08G156500 Gossypium hirsutum HOM05D001546 ORTHO05D008648 2.7e-27 125.6 100 63.0
Oeu005800.1 Olea europaea HOM05D001546 ORTHO05D008648 2.7e-27 125.6 100 64.0
RcHm_v2.0_Chr1g0349891 Rosa chinensis HOM05D001546 ORTHO05D008648 4.7e-27 124.8 100 63.0
Gohir.A08G135700 Gossypium hirsutum HOM05D001546 ORTHO05D008648 1.0e-26 123.6 100 62.0
MSTRG.20739 Avicennia marina HOM05D001546 ORTHO05D008648 4.0e-26 121.7 100 63.0
Duzib138G0139 Durio zibethinus HOM05D001546 ORTHO05D002908 4.0e-26 121.7 102 62.7
Prupe.2G143400 Prunus persica HOM05D001546 ORTHO05D008648 5.2e-26 121.3 103 61.2
Migut.B01619 Erythranthe guttata HOM05D001546 ORTHO05D008648 8.8e-26 120.6 100 63.0
Rhsim07G0028900 Rhododendron simsii HOM05D001546 ORTHO05D008648 1.5e-25 119.8 100 63.0
CiPaw.01G263600 Carya illinoinensis HOM05D001546 ORTHO05D008648 2.6e-25 119.0 100 62.0
SalBow5G5288 Salvia bowleyana HOM05D001546 ORTHO05D008648 3.3e-25 118.6 100 61.0
Thecc.01G378800 Theobroma cacao HOM05D001546 ORTHO05D008648 3.3e-25 118.6 102 61.8
Cc02_g24070 Coffea canephora HOM05D001546 ORTHO05D008648 5.7e-25 117.9 100 62.0
FvH4_7g11500 Fragaria vesca HOM05D001546 ORTHO05D008648 7.5e-25 117.5 100 59.0
GSVIVG01027665001 Vitis vinifera HOM05D001546 ORTHO05D008648 7.5e-25 117.5 100 62.0
vmacro13415 Vaccinium macrocarpon HOM05D001546 ORTHO05D008648 9.7e-25 117.1 100 62.0
SGA_v2.0_scaffold95G28909 Striga asiatica HOM05D001546 ORTHO05D008648 1.3e-24 116.7 100 61.0
FAN06G1243 Fragaria x ananassa HOM05D001546 ORTHO05D002908 1.7e-24 116.3 100 59.0
FAN06G5055 Fragaria x ananassa HOM05D001546 ORTHO05D002908 1.7e-24 116.3 100 59.0
FAN10G0988 Fragaria x ananassa HOM05D001546 ORTHO05D002908 1.7e-24 116.3 100 59.0
ECA236G2516 Erigeron canadensis HOM05D001546 ORTHO05D008648 2.2e-24 115.9 102 60.8
Ciclev10021754m.g Citrus clementina HOM05D001546 ORTHO05D008648 2.8e-24 115.5 101 60.4
Lsat_1_v5_gn_7_9580 Lactuca sativa HOM05D001546 ORTHO05D008648 2.8e-24 115.5 98 63.3
CsaV3_3G009800 Cucumis sativus L. HOM05D001546 ORTHO05D008648 3.7e-24 115.2 100 56.0
FAN10G0703 Fragaria x ananassa HOM05D001546 ORTHO05D002908 3.7e-24 115.2 100 59.0
MD07G1119400 Malus domestica HOM05D001546 ORTHO05D008648 3.7e-24 115.2 100 60.0
Actinidia12247 Actinidia chinensis HOM05D001546 ORTHO05D008648 4.8e-24 114.8 100 60.0
Psat7g230880 Pisum sativum HOM05D001546 ORTHO05D008648 4.8e-24 114.8 100 57.0
MELO3C006201.2 Cucumis melo HOM05D001546 ORTHO05D008648 8.2e-24 114.0 100 56.0
HanXRQChr16g0532481 Helianthus annuus HOM05D001546 ORTHO05D008648 1.1e-23 113.6 102 60.8
TPR.G31325 Trifolium pratense HOM05D001546 ORTHO05D008648 1.1e-23 113.6 99 57.6
Nn1g01135 Nelumbo nucifera HOM05D001546 ORTHO05D008648 1.4e-23 113.2 100 61.0
CSS0003206 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 1.8e-23 112.8 100 59.0
CSS0048837 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 1.8e-23 112.8 100 59.0
Medtr4g024850 Medicago truncatula HOM05D001546 ORTHO05D008648 1.8e-23 112.8 99 57.6
VMungo0331G1707 Vigna mungo HOM05D001546 ORTHO05D008648 4.1e-23 111.7 99 56.6
PSO782G0784 Papaver somniferum HOM05D001546 ORTHO05D008648 7.0e-23 110.9 99 58.6
Ca_19947_v3 Cicer arietinum L. HOM05D001546 ORTHO05D008648 9.1e-23 110.5 99 56.6
Sed0028009 Sechium edule HOM05D001546 ORTHO05D008648 9.1e-23 110.5 100 56.0
ClCG05G002360 Citrullus lanatus HOM05D001546 ORTHO05D008648 1.2e-22 110.2 100 54.0
Medtr4g111780 Medicago truncatula HOM05D001546 ORTHO05D008648 1.2e-22 110.2 99 55.6
PSO832G0911 Papaver somniferum HOM05D001546 ORTHO05D008648 1.2e-22 110.2 99 58.6
Aqoxy7G00663 Aquilegia oxysepala HOM05D001546 ORTHO05D008648 2.0e-22 109.4 102 55.9
Gorai.004G162800 Gossypium raimondii HOM05D001546 ORTHO05D008648 2.0e-22 109.4 131 48.1
DCAR_031520 Daucus carota HOM05D001546 ORTHO05D008648 4.5e-22 108.2 100 59.0
Lalb_Chr07g0189931 Lupinus albus HOM05D001546 ORTHO05D008648 4.5e-22 108.2 100 58.0
PGR042G0240 Punica granatum HOM05D001546 ORTHO05D008648 4.5e-22 108.2 100 60.0
arahy.Tifrunner.gnm1.ann1.KRWE0T Arachis hypogaea HOM05D001546 ORTHO05D008648 1.0e-21 107.1 101 57.4
Lj3g0018034 Lotus japonicus HOM05D001546 ORTHO05D008648 1.0e-21 107.1 100 58.0
Phvul.010G082100 Phaseolus vulgaris HOM05D001546 ORTHO05D008648 1.0e-21 107.1 99 54.5
arahy.Tifrunner.gnm1.ann1.Y484AZ Arachis hypogaea HOM05D001546 ORTHO05D008648 1.3e-21 106.7 100 58.0
arahy.Tifrunner.gnm1.ann1.ZAG0TB Arachis hypogaea HOM05D001546 ORTHO05D008648 2.2e-21 105.9 100 57.0
Eucgr.I00435 Eucalyptus grandis HOM05D001546 ORTHO05D008648 2.9e-21 105.5 100 56.0
QL08p052789 Quercus lobata HOM05D001546 ORTHO05D008648 2.9e-21 105.5 86 60.5
FAN03G2056 Fragaria x ananassa HOM05D001546 ORTHO05D008648 5.0e-21 104.8 103 53.4
Manes.11G109100 Manihot esculenta HOM05D001546 ORTHO05D008648 5.0e-21 104.8 88 59.1
Nitab4.5_0001329g0130 Nicotiana tabacum HOM05D001546 ORTHO05D008648 5.0e-21 104.8 152 45.4
EL10Ac1g00872 Beta vulgaris HOM05D001546 ORTHO05D008648 1.5e-20 103.2 100 57.0
Lj7A531T53 Lonicera japonica HOM05D001546 ORTHO05D008648 1.5e-20 103.2 96 55.2
AUR62004193 Chenopodium quinoa HOM05D001546 ORTHO05D008648 4.2e-20 101.7 100 58.0
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 5.5e-20 101.3 89 59.6
SEGI_35236 Sequoiadendron giganteum HOM05D001546 ORTHO05D008648 9.4e-20 100.5 99 51.5
AUR62013651 Chenopodium quinoa HOM05D001546 ORTHO05D002908 1.2e-19 100.1 100 57.0
CANSAT56G2954 Cannabis sativa HOM05D001546 ORTHO05D008648 2.1e-19 99.4 105 52.4
CANSAT56G4308 Cannabis sativa HOM05D001546 ORTHO05D008648 2.1e-19 99.4 105 52.4
Sc23g0003690 Simmondsia chinensis HOM05D001546 ORTHO05D008648 2.3e-18 95.9 112 49.1
MD02G1207000 Malus domestica HOM05D001546 ORTHO05D008648 4.0e-18 95.1 99 53.5
ATR0757G033 Amborella trichopoda HOM05D001546 ORTHO05D008648 6.8e-18 94.4 99 48.5
Hund17030 Selenicereus undatus HOM05D001546 ORTHO05D008648 6.8e-18 94.4 100 57.0
Os01g0578000 Oryza sativa ssp. japonica HOM05D001546 ORTHO05D008648 8.8e-18 94.0 101 49.5
HPP92_018406 Vanilla planifolia HOM05D001546 ORTHO05D008648 1.2e-17 93.6 100 52.0
Dinv43692 Davidia involucrata HOM05D001546 ORTHO05D008648 7.5e-17 90.9 109 48.6
CAN.G295.12 Capsicum annuum HOM05D001546 ORTHO05D008648 1.7e-16 89.7 50 82.0
Mapoly0114s0015 Marchantia polymorpha HOM05D001546 ORTHO05D008648 1.7e-16 89.7 97 51.5
MBI12_g20322_MAGBIO Magnolia biondii HOM05D001546 ORTHO05D008648 1.1e-15 87.0 75 58.7
unitig_0.g1301 Utricularia gibba HOM05D001546 ORTHO05D008648 7.0e-15 84.3 89 51.7
CDE04G0759 Ceratophyllum demersum HOM05D001546 ORTHO05D008648 1.6e-14 83.2 58 65.5
Potri.014G068100 Populus trichocarpa HOM05D001546 ORTHO05D008648 1.6e-14 83.2 52 75.0
Duzib133G1401 Durio zibethinus HOM05D001546 ORTHO05D008648 1.3e-13 80.1 53 67.9
arahy.Tifrunner.gnm1.ann1.6GCE7S Arachis hypogaea HOM05D001546 ORTHO05D008648 2.2e-13 79.3 55 65.5
Ah.05g176670 Amaranthus hybridus HOM05D001546 ORTHO05D008648 3.8e-13 78.6 154 35.7
CBR_g29371 Chara braunii HOM05D001546 ORTHO05D008648 4.2e-12 75.1 98 39.8
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 1.2e-11 73.6 60 75.0
Glyma.03G027600 Glycine max HOM05D001546 ORTHO05D008648 4.7e-11 71.6 99 44.4
BcaB02g10315 Brassica carinata HOM05D001546 ORTHO05D008648 1.8e-10 69.7 48 79.2
Pp3c5_12400 Physcomitrium patens HOM05D001546 ORTHO05D008648 1.2e-09 67.0 101 37.6
Cre02.g102500 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D008648 1.5e-09 66.6 90 41.1
AagrBONN_evm.TU.Sc2ySwM_228.594 Anthoceros agrestis HOM05D001546 ORTHO05D008648 6.3e-08 61.2 51 51.0
PRCOL_00003537 Prasinoderma coloniale HOM05D001546 ORTHO05D008648 4.1e-07 58.5 54 46.3
MCO01G368 Micromonas commoda HOM05D001363 ORTHO05D008648 3.5e-06 55.5 89 36.0


User provided reference genes

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