Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-162 575.9 289 100.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 9.2e-143 510.4 251 98.8
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 7.1e-135 484.2 239 99.2
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 5.1e-133 478.0 251 92.4
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 5.1e-133 478.0 251 92.4
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 5.1e-133 478.0 251 92.4
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 5.6e-132 474.6 251 92.0
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 1.4e-130 469.9 251 91.2
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 8.9e-130 467.2 252 91.7
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 1.1e-127 460.3 252 90.1
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 3.5e-126 455.3 254 89.4
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 8.7e-125 450.7 266 85.3
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-114 417.2 239 87.0
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 3.1e-114 415.6 251 83.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.6e-102 376.7 251 76.9
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 9.3e-95 350.9 247 69.2
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 5.1e-93 345.1 255 70.2
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.1e-92 344.0 255 70.2
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 3.3e-92 342.4 256 69.9
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 7.4e-92 341.3 256 68.4
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 9.7e-92 340.9 255 70.2
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 9.7e-92 340.9 256 69.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 9.7e-92 340.9 256 69.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 9.7e-92 340.9 256 69.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 9.7e-92 340.9 256 69.5
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 2.2e-91 339.7 255 69.0
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 4.8e-91 338.6 255 69.4
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 8.2e-91 337.8 255 68.2
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-90 337.4 255 69.0
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-90 337.4 248 67.3
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-90 337.0 248 67.3
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 4.1e-90 335.5 255 67.8
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 5.3e-90 335.1 249 66.7
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 9.0e-90 334.3 248 66.5
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 9.0e-90 334.3 255 67.8
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 2.6e-89 332.8 255 67.8
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 2.6e-89 332.8 257 64.2
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 5.9e-89 331.6 213 79.3
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 7.7e-89 331.3 255 67.8
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 7.7e-89 331.3 257 65.0
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-88 330.9 255 68.2
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 2.2e-88 329.7 257 65.0
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.2e-88 329.7 257 64.6
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 2.2e-88 329.7 257 64.6
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.2e-88 329.7 257 64.6
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.9e-88 329.3 257 65.0
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.9e-88 329.3 257 65.4
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 3.8e-88 328.9 255 67.8
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 6.5e-88 328.2 257 63.8
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 8.5e-88 327.8 257 64.2
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 8.5e-88 327.8 257 64.2
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 8.5e-88 327.8 257 64.2
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.1e-87 327.4 257 64.2
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.4e-87 327.0 257 64.2
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 4.2e-87 325.5 247 67.2
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 4.2e-87 325.5 255 64.3
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.5e-87 325.1 257 63.4
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 7.2e-87 324.7 257 63.4
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 7.2e-87 324.7 257 63.8
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.1e-86 323.2 257 63.0
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.1e-86 323.2 257 63.0
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.1e-86 323.2 255 63.1
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.7e-86 322.8 257 64.2
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-86 322.8 257 67.7
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 2.7e-86 322.8 255 63.5
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 4.6e-86 322.0 255 64.3
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 6.1e-86 321.6 180 87.8
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 6.1e-86 321.6 248 64.5
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 7.9e-86 321.2 257 64.2
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 7.9e-86 321.2 254 63.8
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.0e-85 320.9 255 63.9
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.0e-85 320.9 257 63.4
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.0e-85 320.9 255 63.1
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.4e-85 320.5 255 63.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.8e-85 320.1 257 63.0
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.3e-85 319.7 256 61.7
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.9e-85 318.9 256 61.7
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.9e-85 318.9 256 61.7
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 3.9e-85 318.9 248 65.3
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 3.9e-85 318.9 257 62.6
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.9e-85 318.9 254 65.4
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 5.1e-85 318.5 257 63.0
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 5.1e-85 318.5 255 62.7
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 6.7e-85 318.2 257 62.3
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 8.8e-85 317.8 257 60.3
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 8.8e-85 317.8 257 60.3
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 1.5e-84 317.0 257 62.3
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 2.0e-84 316.6 256 62.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 2.0e-84 316.6 257 61.9
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 3.3e-84 315.8 257 61.5
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.3e-84 315.8 255 62.4
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 3.3e-84 315.8 259 61.4
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 5.7e-84 315.1 257 61.5
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 9.7e-84 314.3 257 61.5
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 9.7e-84 314.3 255 62.0
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.2e-83 313.2 255 62.4
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.8e-83 312.8 257 61.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.8e-83 312.0 257 59.9
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 8.2e-83 311.2 255 61.6
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 8.2e-83 311.2 247 61.1
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.4e-82 310.5 299 57.2
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 4.1e-82 308.9 247 62.3
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 4.1e-82 308.9 253 60.9
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.1e-82 308.9 247 64.8
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 5.3e-82 308.5 256 60.2
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.2e-81 307.4 257 60.7
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.5e-81 307.0 249 61.4
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.5e-81 307.0 252 60.3
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.0e-81 306.6 241 61.4
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.0e-81 306.6 257 59.9
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.0e-81 306.6 248 62.5
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.0e-81 306.6 257 59.5
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 3.4e-81 305.8 256 57.4
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 4.5e-81 305.4 240 62.1
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.0e-80 304.3 257 58.8
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.7e-80 303.5 241 60.6
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 2.2e-80 303.1 237 60.8
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.1e-79 300.8 268 59.3
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.1e-79 300.8 253 56.1
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 2.5e-79 299.7 299 54.8
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 3.6e-78 295.8 233 60.5
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 4.7e-78 295.4 233 60.1
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.0e-77 294.3 257 59.9
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.8e-77 293.5 237 57.8
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 3.0e-77 292.7 255 56.9
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 3.9e-77 292.4 250 64.4
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 5.1e-77 292.0 252 57.9
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 5.1e-77 292.0 247 60.7
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.5e-76 290.4 254 60.2
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.6e-76 289.7 268 54.9
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 4.4e-76 288.9 203 68.0
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 7.4e-76 288.1 257 58.0
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 7.4e-76 288.1 252 57.1
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 9.7e-76 287.7 238 57.6
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 3.7e-75 285.8 226 62.4
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 7.0e-74 281.6 220 60.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 7.7e-73 278.1 244 58.2
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.9e-72 276.2 288 54.5
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 4.2e-71 272.3 236 57.6
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 5.5e-71 271.9 236 53.8
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 2.7e-70 269.6 227 60.8
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.7e-70 269.6 255 49.4
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 3.6e-70 269.2 258 51.9
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.1e-68 264.2 253 51.4
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 2.6e-68 263.1 192 65.1
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.6e-68 263.1 237 51.9
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.7e-67 260.4 258 56.2
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.7e-67 260.4 270 54.1
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.5e-63 247.3 238 50.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 4.7e-62 242.3 251 52.6
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 4.7e-62 242.3 280 49.6
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.7e-59 233.8 236 51.7
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 4.5e-57 225.7 191 58.6
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.9e-49 198.7 133 67.7
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 9.5e-47 191.4 92 100.0
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 9.5e-47 191.4 138 59.4
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 4.0e-45 186.0 138 58.7
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.2e-44 184.5 233 42.1
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 2.6e-44 183.3 214 47.7
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 7.5e-44 181.8 150 64.0
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 9.8e-44 181.4 245 42.0
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.7e-43 180.6 254 44.9
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 6.3e-43 178.7 152 57.9
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 8.3e-43 178.3 200 45.5
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.4e-42 177.6 169 49.7
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-42 177.2 263 44.9
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.2e-42 176.4 156 56.4
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.9e-40 169.5 249 43.0
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.6e-38 164.1 251 39.4
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 6.1e-38 162.2 248 38.3
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.4e-36 156.4 227 41.4
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.2e-34 149.8 99 73.7
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-30 137.1 152 52.0
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.1e-30 137.1 125 59.2
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 1.8e-29 134.0 118 60.2
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 8.9e-29 131.7 117 61.5
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-26 124.8 85 74.1
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 3.0e-24 116.7 77 62.3
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.5e-23 114.4 123 52.8
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.8e-20 102.4 104 49.0
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.4e-13 81.3 87 51.7
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-11 74.7 52 73.1
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-11 74.7 52 73.1
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.9e-11 73.6 52 71.2
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.4e-11 72.0 52 69.2
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 1.2e-09 68.2 47 61.7


User provided reference genes

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