Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10242 Brassica carinata HOM05D000282 ORTHO05D013245 8.0e-48 193.4 93 100.0
C04p31170 Brassica napus HOM05D000282 ORTHO05D013245 8.0e-48 193.4 93 100.0
BolC4t24670H Brassica oleracea HOM05D000282 ORTHO05D013245 3.2e-44 181.4 91 96.7
AL5G44050 Arabidopsis lyrata HOM05D000282 ORTHO05D004791 1.2e-43 179.5 97 91.8
AT3G61650 Arabidopsis thaliana HOM05D000282 ORTHO05D004791 1.2e-43 179.5 97 91.8
Carub.0005s2834 Capsella rubella HOM05D000282 ORTHO05D004791 1.2e-43 179.5 97 91.8
Thhalv10005943m.g Eutrema salsugineum HOM05D000282 ORTHO05D004791 2.0e-43 178.7 97 91.8
AL6G15510 Arabidopsis lyrata HOM05D000282 ORTHO05D004791 2.7e-43 178.3 97 90.7
Carub.0006s0452 Capsella rubella HOM05D000282 ORTHO05D004791 2.7e-43 178.3 97 90.7
Aa31LG10G15630 Aethionema arabicum HOM05D000282 ORTHO05D004791 4.6e-43 177.6 97 90.7
CARHR004860 Cardamine hirsuta HOM05D000282 ORTHO05D004791 4.6e-43 177.6 97 90.7
AT5G05620 Arabidopsis thaliana HOM05D000282 ORTHO05D004791 7.8e-43 176.8 97 89.7
BcaB02g07362 Brassica carinata HOM05D000282 ORTHO05D004791 1.3e-42 176.0 97 90.7
Sp5g01760 Schrenkiella parvula HOM05D000282 ORTHO05D004791 1.3e-42 176.0 97 89.7
GSVIVG01027050001 Vitis vinifera HOM05D000282 ORTHO05D004791 8.6e-42 173.3 95 89.5
CANSAT56G2763 Cannabis sativa HOM05D000282 ORTHO05D013245 1.1e-41 172.9 95 89.5
Cfa003833 Carpinus fangiana HOM05D000282 ORTHO05D004791 1.1e-41 172.9 95 89.5
Haze_15621 Corylus avellana HOM05D000282 ORTHO05D004791 1.1e-41 172.9 95 89.5
Hund27221 Selenicereus undatus HOM05D000282 ORTHO05D004791 1.5e-41 172.6 97 87.6
BcaC07g40674 Brassica carinata HOM05D000282 ORTHO05D004791 1.9e-41 172.2 97 89.7
A09p53710 Brassica napus HOM05D000282 ORTHO05D004791 1.9e-41 172.2 97 89.7
C08p36490 Brassica napus HOM05D000282 ORTHO05D004791 1.9e-41 172.2 97 89.7
BolC8t51232H Brassica oleracea HOM05D000282 ORTHO05D004791 1.9e-41 172.2 97 89.7
BraA09t40793Z Brassica rapa HOM05D000282 ORTHO05D004791 1.9e-41 172.2 97 89.7
vmacro13149 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 1.9e-41 172.2 97 87.6
Rhsim07G0006700 Rhododendron simsii HOM05D000282 ORTHO05D004791 3.3e-41 171.4 97 86.6
Hund16696 Selenicereus undatus HOM05D000282 ORTHO05D004791 3.3e-41 171.4 97 86.6
Sc01g0002960 Simmondsia chinensis HOM05D000282 ORTHO05D004791 3.3e-41 171.4 95 88.4
THA.LOC104817337 Tarenaya hassleriana HOM05D000282 ORTHO05D004791 3.3e-41 171.4 97 87.6
Manes.01G249000 Manihot esculenta HOM05D000282 ORTHO05D004791 4.3e-41 171.0 95 87.4
TWI81G0677 Tripterygium wilfordii HOM05D000282 ORTHO05D004791 4.3e-41 171.0 97 86.6
Duzib133G0471 Durio zibethinus HOM05D000282 ORTHO05D004791 5.6e-41 170.6 95 88.4
Duzib138G0443 Durio zibethinus HOM05D000282 ORTHO05D004791 5.6e-41 170.6 95 88.4
Eucgr.E00075 Eucalyptus grandis HOM05D000282 ORTHO05D004791 5.6e-41 170.6 96 86.5
Gohir.A11G094800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 5.6e-41 170.6 94 89.4
Gohir.D11G099800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 5.6e-41 170.6 94 89.4
Gorai.007G106000 Gossypium raimondii HOM05D000282 ORTHO05D004791 5.6e-41 170.6 94 89.4
Sed0019380 Sechium edule HOM05D000282 ORTHO05D004791 5.6e-41 170.6 95 88.4
CSS0036656 Camellia sinensis var. sinensis HOM05D000282 ORTHO05D004791 7.3e-41 170.2 97 85.6
CiPaw.01G072200 Carya illinoinensis HOM05D000282 ORTHO05D004791 7.3e-41 170.2 94 88.3
Potri.014G094900 Populus trichocarpa HOM05D000282 ORTHO05D004791 7.3e-41 170.2 97 87.6
Cpa.g.sc194.8 Carica papaya HOM05D000282 ORTHO05D004791 9.5e-41 169.9 95 86.3
MELO3C006063.2 Cucumis melo HOM05D000282 ORTHO05D004791 9.5e-41 169.9 95 87.4
CsaV3_3G008430 Cucumis sativus L. HOM05D000282 ORTHO05D004791 9.5e-41 169.9 95 87.4
Ciclev10019995m.g Citrus clementina HOM05D000282 ORTHO05D004791 1.2e-40 169.5 95 87.4
Actinidia10105 Actinidia chinensis HOM05D000282 ORTHO05D004791 1.6e-40 169.1 94 87.2
Thecc.01G347400 Theobroma cacao HOM05D000282 ORTHO05D004791 1.6e-40 169.1 95 87.4
Ah.05g179880 Amaranthus hybridus HOM05D000282 ORTHO05D004791 2.1e-40 168.7 95 86.3
ClCG05G001100 Citrullus lanatus HOM05D000282 ORTHO05D004791 2.1e-40 168.7 95 86.3
Dinv32555 Davidia involucrata HOM05D000282 ORTHO05D004791 2.1e-40 168.7 95 86.3
Hma1.2p1_0077F.1_g039810 Hydrangea macrophylla HOM05D000282 ORTHO05D004791 2.1e-40 168.7 95 86.3
Nn3g19105 Nelumbo nucifera HOM05D000282 ORTHO05D004791 2.1e-40 168.7 95 87.4
Potri.002G167800 Populus trichocarpa HOM05D000282 ORTHO05D004791 2.1e-40 168.7 97 86.6
TWI60G1292 Tripterygium wilfordii HOM05D000282 ORTHO05D004791 2.1e-40 168.7 93 88.2
CSS0024011 Camellia sinensis var. sinensis HOM05D000282 ORTHO05D004791 2.8e-40 168.3 95 86.3
COL.COLO4_06331 Corchorus olitorius HOM05D000282 ORTHO05D004791 2.8e-40 168.3 95 87.4
LjContig00049g0003003 Lotus japonicus HOM05D000282 ORTHO05D004791 3.6e-40 167.9 93 88.2
QL04p058632 Quercus lobata HOM05D000282 ORTHO05D004791 3.6e-40 167.9 92 89.1
QL04p059427 Quercus lobata HOM05D000282 ORTHO05D004791 3.6e-40 167.9 92 89.1
vmacro13193 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 3.6e-40 167.9 93 88.2
Atru.chr5.622 Acer truncatum HOM05D000282 ORTHO05D004791 4.7e-40 167.5 94 86.2
EL10Ac1g00313 Beta vulgaris HOM05D000282 ORTHO05D004791 6.2e-40 167.2 95 85.3
AUR62004452 Chenopodium quinoa HOM05D000282 ORTHO05D004791 6.2e-40 167.2 95 85.3
AUR62023497 Chenopodium quinoa HOM05D000282 ORTHO05D004791 6.2e-40 167.2 95 85.3
Lj1g0019806 Lotus japonicus HOM05D000282 ORTHO05D004791 6.2e-40 167.2 94 86.2
MD07G1145100 Malus domestica HOM05D000282 ORTHO05D004791 6.2e-40 167.2 95 86.3
Manes.05G025900 Manihot esculenta HOM05D000282 ORTHO05D004791 6.2e-40 167.2 94 86.2
BcaB02g08149 Brassica carinata HOM05D000282 ORTHO05D013245 8.0e-40 166.8 97 88.7
Gohir.D12G114100 Gossypium hirsutum HOM05D000282 ORTHO05D004791 8.0e-40 166.8 94 87.2
Gorai.008G123600 Gossypium raimondii HOM05D000282 ORTHO05D004791 8.0e-40 166.8 94 87.2
Rhsim01G0169600 Rhododendron simsii HOM05D000282 ORTHO05D004791 1.0e-39 166.4 97 85.6
Ca_09494_v3 Cicer arietinum L. HOM05D000282 ORTHO05D004791 1.8e-39 165.6 93 86.0
MD01G1076100 Malus domestica HOM05D000282 ORTHO05D004791 1.8e-39 165.6 95 85.3
ATR1100G023 Amborella trichopoda HOM05D000282 ORTHO05D004791 2.3e-39 165.2 94 85.1
Gohir.A12G110800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 2.3e-39 165.2 94 86.2
MBI07_g20449_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 2.3e-39 165.2 95 85.3
Medtr7g117050 Medicago truncatula HOM05D000282 ORTHO05D004791 4.0e-39 164.5 93 84.9
PSO384G3855 Papaver somniferum HOM05D000282 ORTHO05D004791 4.0e-39 164.5 93 84.9
PSO713G0028 Papaver somniferum HOM05D000282 ORTHO05D004791 4.0e-39 164.5 93 84.9
Nitab4.5_0004750g0010 Nicotiana tabacum HOM05D000282 ORTHO05D004791 5.2e-39 164.1 97 82.5
Prupe.2G100900 Prunus persica HOM05D000282 ORTHO05D004791 5.2e-39 164.1 95 84.2
Prupe.8G052800 Prunus persica HOM05D000282 ORTHO05D004791 5.2e-39 164.1 95 84.2
vmacro22518 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 5.2e-39 164.1 93 84.9
Prupe.1G559600 Prunus persica HOM05D000282 ORTHO05D004791 6.8e-39 163.7 97 82.5
TPR.G4706 Trifolium pratense HOM05D000282 ORTHO05D004791 6.8e-39 163.7 93 83.9
Cc04_g10460 Coffea canephora HOM05D000282 ORTHO05D004791 8.9e-39 163.3 95 83.2
SGA_v2.0_scaffold48G17909 Striga asiatica HOM05D000282 ORTHO05D004791 1.2e-38 162.9 97 82.5
TAR375G0782 Trochodendron aralioides HOM05D000282 ORTHO05D004791 1.2e-38 162.9 94 84.0
FvH4_7g15920 Fragaria vesca HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
FAN01G1869 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
FAN03G1170 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
FAN06G3555 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
FAN06G5129 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
FAN10G2511 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
FAN10G4217 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
Nn1g01799 Nelumbo nucifera HOM05D000282 ORTHO05D004791 1.5e-38 162.5 94 84.0
RcHm_v2.0_Chr1g0358791 Rosa chinensis HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 83.2
SalBow3G2106 Salvia bowleyana HOM05D000282 ORTHO05D004791 1.5e-38 162.5 95 82.1
ATR0069G056 Amborella trichopoda HOM05D000282 ORTHO05D004791 2.6e-38 161.8 93 84.9
CAN.G352.6 Capsicum annuum HOM05D000282 ORTHO05D004791 2.6e-38 161.8 97 80.4
Lalb_Chr04g0261761 Lupinus albus HOM05D000282 ORTHO05D004791 2.6e-38 161.8 93 83.9
Sopen03g030510 Solanum pennellii HOM05D000282 ORTHO05D004791 2.6e-38 161.8 97 80.4
PGSC0003DMG400015180 Solanum tuberosum HOM05D000282 ORTHO05D004791 2.6e-38 161.8 97 80.4
Peaxi162Scf00089g00639 Petunia axillaris HOM05D000282 ORTHO05D004791 3.4e-38 161.4 97 81.4
Aqoxy7G00158 Aquilegia oxysepala HOM05D000282 ORTHO05D004791 4.4e-38 161.0 95 84.2
Oeu045482.2 Olea europaea HOM05D000282 ORTHO05D004791 4.4e-38 161.0 97 80.4
TAR636G2021 Trochodendron aralioides HOM05D000282 ORTHO05D004791 7.5e-38 160.2 94 83.0
Psat3g003120 Pisum sativum HOM05D000282 ORTHO05D004791 9.8e-38 159.8 93 82.8
Solyc03g111380.3 Solanum lycopersicum HOM05D000282 ORTHO05D004791 9.8e-38 159.8 97 79.4
Migut.G00954 Erythranthe guttata HOM05D000282 ORTHO05D004791 1.7e-37 159.1 93 83.9
HanXRQChr15g0472351 Helianthus annuus HOM05D000282 ORTHO05D004791 1.7e-37 159.1 95 82.1
Nitab4.5_0002855g0020 Nicotiana tabacum HOM05D000282 ORTHO05D004791 1.7e-37 159.1 95 78.9
HanXRQChr04g0120991 Helianthus annuus HOM05D000282 ORTHO05D004791 2.2e-37 158.7 97 80.4
Psat0s1524g0080 Pisum sativum HOM05D000282 ORTHO05D013245 2.2e-37 158.7 93 81.7
Lj2C48T5 Lonicera japonica HOM05D000282 ORTHO05D004791 3.7e-37 157.9 95 80.0
VMungo0540G0505 Vigna mungo HOM05D000282 ORTHO05D004791 6.4e-37 157.1 92 83.7
CDE02G4105 Ceratophyllum demersum HOM05D000282 ORTHO05D004791 8.3e-37 156.8 97 78.4
MBI06_g32762_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 1.1e-36 156.4 97 79.4
AagrBONN_evm.TU.Sc2ySwM_228.3904 Anthoceros agrestis HOM05D000282 ORTHO05D004791 1.4e-36 156.0 94 76.6
Glyma.19G253300 Glycine max HOM05D000282 ORTHO05D004791 1.4e-36 156.0 92 82.6
CDE09G0145 Ceratophyllum demersum HOM05D000282 ORTHO05D004791 1.9e-36 155.6 97 77.3
Glyma.03G255800 Glycine max HOM05D000282 ORTHO05D004791 1.9e-36 155.6 93 82.8
HPP92_012797 Vanilla planifolia HOM05D000282 ORTHO05D004791 3.2e-36 154.8 97 78.4
Lsat_1_v5_gn_7_1921 Lactuca sativa HOM05D000282 ORTHO05D004791 4.1e-36 154.5 97 78.4
Lj9A592T68 Lonicera japonica HOM05D000282 ORTHO05D004791 7.0e-36 153.7 95 78.9
Pp3c22_2850 Physcomitrium patens HOM05D000282 ORTHO05D004791 7.0e-36 153.7 94 77.7
Mapoly0046s0055 Marchantia polymorpha HOM05D000282 ORTHO05D004791 1.6e-35 152.5 93 77.4
Pp3c19_7110 Physcomitrium patens HOM05D000282 ORTHO05D004791 1.6e-35 152.5 94 76.6
Sabra14G0069500 Salix brachista HOM05D000282 ORTHO05D004791 1.6e-35 152.5 132 64.4
Nitab4.5_0003282g0050 Nicotiana tabacum HOM05D000282 ORTHO05D004791 2.7e-35 151.8 88 84.1
ECA236G0122 Erigeron canadensis HOM05D000282 ORTHO05D004791 3.5e-35 151.4 97 76.3
DCAR_006965 Daucus carota HOM05D000282 ORTHO05D004791 6.0e-35 150.6 93 78.5
Zm00001eb345620 Zea mays HOM05D000282 ORTHO05D004791 1.0e-34 149.8 90 81.1
Os05g0156600 Oryza sativa ssp. japonica HOM05D000282 ORTHO05D004791 1.3e-34 149.4 90 80.0
Phvul.006G110500 Phaseolus vulgaris HOM05D000282 ORTHO05D004791 1.3e-34 149.4 92 79.3
CiPaw.02G038600 Carya illinoinensis HOM05D000282 ORTHO05D004791 3.0e-34 148.3 75 93.3
Zm00001eb282650 Zea mays HOM05D000282 ORTHO05D004791 3.0e-34 148.3 90 80.0
Lj7C504T3 Lonicera japonica HOM05D000282 ORTHO05D004791 8.6e-34 146.7 95 76.8
arahy.Tifrunner.gnm1.ann1.GE9U5Y Arachis hypogaea HOM05D000282 ORTHO05D004791 1.5e-33 146.0 87 79.3
arahy.Tifrunner.gnm1.ann1.LPHW23 Arachis hypogaea HOM05D000282 ORTHO05D004791 1.5e-33 146.0 87 79.3
arahy.Tifrunner.gnm1.ann1.ZP6T3L Arachis hypogaea HOM05D000282 ORTHO05D004791 1.5e-33 146.0 87 79.3
SHI16878 Sapria himalayana HOM05D000282 ORTHO05D004791 7.3e-33 143.7 75 90.7
SMO118G0144 Selaginella moellendorffii HOM05D000282 ORTHO05D004791 1.6e-32 142.5 95 72.6
unitig_8.g4945 Utricularia gibba HOM05D000282 ORTHO05D004791 1.6e-32 142.5 84 83.3
Lsat_1_v5_gn_5_84941 Lactuca sativa HOM05D000282 ORTHO05D004791 4.7e-32 141.0 92 73.9
arahy.Tifrunner.gnm1.ann1.7V87L9 Arachis hypogaea HOM05D000282 ORTHO05D004791 8.1e-32 140.2 87 77.0
MBI07_g09923_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 2.3e-31 138.7 138 57.2
HanXRQChr17g0562591 Helianthus annuus HOM05D000282 ORTHO05D004791 3.7e-29 131.3 96 66.7
A04p00980 Brassica napus HOM05D000282 ORTHO05D013245 4.9e-29 131.0 97 72.2
Nitab4.5_0002062g0030 Nicotiana tabacum HOM05D000282 ORTHO05D004791 7.1e-28 127.1 76 77.6
CBR_g39634 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-26 121.3 74 77.0
DCAR_016073 Daucus carota HOM05D000282 ORTHO05D013245 7.3e-25 117.1 97 63.9
BcaC02g10243 Brassica carinata HOM05D000282 ORTHO05D013245 2.1e-24 115.5 54 100.0
arahy.Tifrunner.gnm1.ann1.HP7BC0 Arachis hypogaea HOM05D000282 ORTHO05D004791 6.2e-24 114.0 62 87.1
MCO13G304 Micromonas commoda HOM05D000282 ORTHO05D004791 1.1e-23 113.2 91 58.2
PRCOL_00004163 Prasinoderma coloniale HOM05D000282 ORTHO05D004791 1.8e-23 112.5 86 65.1
DCAR_016076 Daucus carota HOM05D000282 ORTHO05D013245 4.6e-19 97.8 97 55.7
PGR031G0774 Punica granatum HOM05D000282 ORTHO05D004791 4.6e-19 97.8 91 59.3
Lj4A906T36 Lonicera japonica HOM05D000282 ORTHO05D013245 8.1e-16 87.0 74 59.5
Lj8A41T51 Lonicera japonica HOM05D000282 ORTHO05D013245 1.4e-15 86.3 89 50.6
MBI19_g10806_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 2.9e-13 78.6 54 68.5
Cfa025047 Carpinus fangiana HOM05D000282 ORTHO05D004791 5.4e-12 74.3 69 49.3
Cre06.g299300 Chlamydomonas reinhardtii HOM05D000282 ORTHO05D004791 9.3e-12 73.6 80 47.5
Haze_27518 Corylus avellana HOM05D000282 ORTHO05D004791 1.5e-09 66.2 69 43.5
MBI19_g33012_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 1.1e-07 60.1 32 87.5
Lj5A750G49 Lonicera japonica HOM05D000282 ORTHO05D013245 5.3e-07 57.8 35 74.3


User provided reference genes

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