Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p25620 Brassica napus HOM05D002001 ORTHO05D004100 2.4e-102 375.6 192 100.0
C05p50850 Brassica napus HOM05D002001 ORTHO05D004100 1.2e-101 373.2 192 99.5
BolC4t24247H Brassica oleracea HOM05D002001 ORTHO05D004100 7.1e-99 364.0 186 98.9
BcaC02g10597 Brassica carinata HOM05D002001 ORTHO05D004100 3.1e-86 322.0 202 84.2
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 1.5e-85 319.7 230 75.7
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 1.5e-85 319.7 230 75.7
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 1.5e-85 319.7 230 75.7
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 2.0e-85 319.3 230 75.2
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 5.8e-85 317.8 230 75.2
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 5.8e-85 317.8 230 75.2
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 6.4e-84 314.3 230 73.5
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 1.2e-82 310.1 230 73.0
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 7.9e-82 307.4 230 73.5
Aa31LG2G9570 Aethionema arabicum HOM05D002001 ORTHO05D004100 2.3e-81 305.8 230 72.6
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 2.3e-81 305.8 230 72.2
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 3.9e-81 305.1 230 71.7
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 3.1e-78 295.4 230 69.6
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 3.8e-76 288.5 230 68.3
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 6.4e-76 287.7 230 67.0
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 1.1e-75 287.0 230 66.5
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 1.4e-75 286.6 229 67.7
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 2.4e-75 285.8 230 66.1
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 2.4e-75 285.8 230 66.1
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 2.4e-75 285.8 230 66.1
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 2.1e-74 282.7 230 65.7
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 2.1e-74 282.7 230 64.8
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 6.0e-74 281.2 230 65.7
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 6.0e-74 281.2 230 65.7
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 7.9e-74 280.8 231 65.4
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 1.0e-73 280.4 230 65.2
Cpa.g.sc118.41 Carica papaya HOM05D002001 ORTHO05D004100 1.8e-73 279.6 230 65.7
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 3.9e-73 278.5 230 65.2
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 2.5e-72 275.8 230 64.8
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 1.3e-71 273.5 230 63.5
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 3.7e-71 271.9 230 61.3
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 3.7e-71 271.9 230 62.6
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 8.2e-71 270.8 230 62.6
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 8.2e-71 270.8 230 61.7
Hma1.2p1_2522F.1_g323890 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 1.1e-70 270.4 230 63.5
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 1.1e-70 270.4 232 62.5
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.4e-70 270.0 230 62.6
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 2.4e-70 269.2 230 63.9
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 3.1e-70 268.9 230 63.5
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 5.3e-70 268.1 230 60.9
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 5.3e-70 268.1 229 62.4
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 6.9e-70 267.7 230 62.6
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 6.9e-70 267.7 230 62.2
Hma1.2p1_2522F.1_g323860 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 9.0e-70 267.3 230 62.2
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 1.2e-69 266.9 230 62.6
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 1.2e-69 266.9 230 62.2
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 4.5e-69 265.0 231 62.3
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 4.5e-69 265.0 230 60.0
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 5.8e-69 264.6 230 60.9
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 7.6e-69 264.2 230 60.9
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 1.0e-68 263.8 230 60.4
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.3e-68 263.5 230 61.7
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.3e-68 263.5 229 61.6
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 2.9e-68 262.3 230 60.9
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 3.8e-68 261.9 230 60.9
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 4.9e-68 261.5 230 60.0
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 8.4e-68 260.8 229 60.7
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 8.4e-68 260.8 229 60.7
Haze_01808 Corylus avellana HOM05D002001 ORTHO05D004100 1.4e-67 260.0 230 60.0
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 1.9e-67 259.6 228 62.3
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 2.5e-67 259.2 229 59.4
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 2.5e-67 259.2 230 59.6
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 3.2e-67 258.8 230 60.9
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 3.2e-67 258.8 230 58.7
CsaV3_5G029980 Cucumis sativus L. HOM05D002001 ORTHO05D004100 3.2e-67 258.8 230 58.7
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 4.2e-67 258.5 229 58.5
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 4.2e-67 258.5 230 59.1
MELO3C027241.2 Cucumis melo HOM05D002001 ORTHO05D004100 9.3e-67 257.3 230 58.3
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 9.3e-67 257.3 233 59.7
Prupe.1G574900 Prunus persica HOM05D002001 ORTHO05D004100 9.3e-67 257.3 230 60.9
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 9.3e-67 257.3 231 58.4
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 1.2e-66 256.9 230 58.3
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 1.2e-66 256.9 224 59.4
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 1.2e-66 256.9 230 60.0
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 1.6e-66 256.5 229 59.0
CAN.G290.19 Capsicum annuum HOM05D002001 ORTHO05D004100 1.6e-66 256.5 229 58.5
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 2.1e-66 256.1 230 57.8
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 2.1e-66 256.1 229 58.5
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 2.1e-66 256.1 229 58.5
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 2.1e-66 256.1 237 58.2
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 2.7e-66 255.8 230 58.7
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.5e-66 255.4 230 58.7
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 3.5e-66 255.4 230 60.4
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 3.5e-66 255.4 229 58.5
Glyma.12G168900 Glycine max HOM05D002001 ORTHO05D004100 4.6e-66 255.0 237 58.6
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 4.6e-66 255.0 230 59.6
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 6.0e-66 254.6 230 59.1
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 7.9e-66 254.2 230 59.6
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 1.0e-65 253.8 237 58.2
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 1.0e-65 253.8 229 58.1
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 1.3e-65 253.4 230 58.7
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 3.0e-65 252.3 230 60.0
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 3.0e-65 252.3 229 58.1
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 3.0e-65 252.3 230 58.7
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 3.0e-65 252.3 230 57.8
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 3.9e-65 251.9 230 60.0
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 5.1e-65 251.5 237 57.4
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 5.1e-65 251.5 237 57.4
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 6.7e-65 251.1 222 58.1
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 6.7e-65 251.1 230 60.0
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 8.7e-65 250.8 230 58.7
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 8.7e-65 250.8 233 62.2
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 8.7e-65 250.8 230 60.0
Aqoxy7G01151 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 1.5e-64 250.0 222 58.1
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 9.7e-64 247.3 230 57.8
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 1.1e-62 243.8 230 57.0
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 5.3e-62 241.5 230 55.7
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 2.0e-61 239.6 230 57.0
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 4.5e-61 238.4 230 56.5
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 4.5e-61 238.4 222 57.2
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 4.5e-61 238.4 228 55.7
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 7.6e-61 237.7 213 59.6
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 1.0e-60 237.3 230 53.9
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.0e-60 237.3 230 53.9
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.0e-60 237.3 230 53.9
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.2e-60 236.1 230 53.5
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 5.0e-60 235.0 228 55.7
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.5e-60 234.6 230 53.9
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 1.2e-58 230.3 241 52.3
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 4.6e-58 228.4 228 53.5
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 3.0e-57 225.7 235 50.2
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 8.8e-57 224.2 235 49.8
SEGI_19065 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.1e-56 223.8 211 55.0
SEGI_00225 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.9e-56 223.0 211 55.0
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 4.3e-56 221.9 224 54.9
SEGI_30549 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 5.9e-53 211.5 211 53.6
Nitab4.5_0028330g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.7e-52 209.9 226 54.4
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.5e-51 206.1 231 51.9
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 1.2e-50 203.8 187 59.9
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 3.6e-50 202.2 212 48.1
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 7.9e-50 201.1 212 48.6
FvH4_5g28770 Fragaria vesca HOM05D002001 ORTHO05D004100 1.8e-49 199.9 141 69.5
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 3.9e-49 198.7 232 51.3
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 6.7e-49 198.0 212 48.6
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 2.6e-48 196.1 212 46.7
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 4.4e-48 195.3 219 45.7
AagrBONN_evm.TU.Sc2ySwM_228.5774 Anthoceros agrestis HOM05D002001 ORTHO05D004100 3.7e-47 192.2 212 45.8
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 3.7e-47 192.2 228 45.2
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 3.7e-47 192.2 228 45.2
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 1.8e-46 189.9 229 48.5
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 1.8e-46 189.9 129 76.0
CiPaw.06G144600 Carya illinoinensis HOM05D002001 ORTHO05D004100 7.0e-46 188.0 181 55.2
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 7.0e-46 188.0 231 48.5
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 2.0e-45 186.4 187 53.5
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 7.7e-45 184.5 187 51.9
CSS0036640 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 1.4e-43 180.3 191 52.9
FAN13G2793 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.0e-41 174.1 233 44.2
Prupe.I006200 Prunus persica HOM05D002001 ORTHO05D004100 3.7e-39 165.6 170 55.3
COL.COLO4_31914 Corchorus olitorius HOM05D002001 ORTHO05D004100 1.9e-35 153.3 147 59.2
FAN08G2113 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.7e-32 141.7 141 53.9
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.2e-29 134.0 155 51.0
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 9.4e-27 124.4 213 34.7
FAN06G3162 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.7e-24 115.2 154 46.1
Haze_26930 Corylus avellana HOM05D002001 ORTHO05D004100 1.3e-23 114.0 237 32.1
FvH4_7g26770 Fragaria vesca HOM05D002001 ORTHO05D004100 1.7e-23 113.6 154 45.5
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 9.5e-19 97.8 144 38.9
Nitab4.5_0005079g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 6.8e-17 91.7 115 47.8
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 1.8e-14 83.6 146 37.7
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 4.1e-14 82.4 114 43.9
GSVIVG01023356001 Vitis vinifera HOM05D002001 ORTHO05D004100 4.1e-14 82.4 61 65.6
FvH4_7g26760 Fragaria vesca HOM05D002001 ORTHO05D004100 2.3e-12 76.6 57 66.7
FAN06G3093 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.3e-12 76.6 57 66.7
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 5.6e-11 72.0 48 72.9


User provided reference genes

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