Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p25610 Brassica napus HOM05D002001 ORTHO05D024500 5.9e-52 207.2 102 100.0
BolC4t24248H Brassica oleracea HOM05D002001 ORTHO05D024500 1.1e-42 176.4 88 100.0
C05p50840 Brassica napus HOM05D002001 ORTHO05D024500 6.3e-38 160.6 81 97.5
A03p68910 Brassica napus HOM05D002001 ORTHO05D024500 1.6e-36 156.0 98 82.7
BraSC39t46173Z Brassica rapa HOM05D002001 ORTHO05D024500 1.5e-31 139.4 89 83.1
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 5.4e-13 77.8 53 77.4
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 7.0e-13 77.4 50 82.0
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 7.0e-13 77.4 50 82.0
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 7.0e-13 77.4 50 82.0
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 9.2e-13 77.0 50 80.0
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 9.2e-13 77.0 50 82.0
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 9.2e-13 77.0 50 80.0
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 9.2e-13 77.0 50 80.0
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 9.2e-13 77.0 50 82.0
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 9.2e-13 77.0 50 82.0
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 1.2e-12 76.6 72 56.9
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 1.2e-12 76.6 50 80.0
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 2.0e-12 75.9 50 80.0
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 2.0e-12 75.9 50 80.0
CiPaw.06G144700 Carya illinoinensis HOM05D002001 ORTHO05D004100 2.0e-12 75.9 50 80.0
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 2.0e-12 75.9 50 80.0
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 78.0
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 78.0
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 2.7e-12 75.5 53 75.5
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 78.0
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 2.7e-12 75.5 50 80.0
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 2.7e-12 75.5 57 73.7
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Dinv24311 Davidia involucrata HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 3.5e-12 75.1 54 74.1
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 78.0
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 3.5e-12 75.1 50 80.0
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 3.5e-12 75.1 63 63.5
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 3.5e-12 75.1 63 63.5
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 3.5e-12 75.1 50 80.0
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 4.6e-12 74.7 50 78.0
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 4.6e-12 74.7 82 53.7
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 4.6e-12 74.7 50 80.0
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 4.6e-12 74.7 50 76.0
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 6.0e-12 74.3 50 78.0
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 76.0
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 7.8e-12 73.9 50 78.0
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 1.0e-11 73.6 50 78.0
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 1.0e-11 73.6 50 78.0
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 1.0e-11 73.6 63 63.5
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 1.0e-11 73.6 50 76.0
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.0e-11 73.6 50 78.0
Aqoxy7G01152 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 1.3e-11 73.2 63 61.9
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 1.3e-11 73.2 63 61.9
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 1.3e-11 73.2 50 76.0
SEGI_19065 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.3e-11 73.2 50 78.0
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 76.0
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 76.0
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 76.0
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 76.0
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 76.0
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 76.0
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 78.0
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 1.7e-11 72.8 50 78.0
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 2.3e-11 72.4 50 76.0
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 2.3e-11 72.4 50 78.0
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.3e-11 72.4 50 78.0
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.3e-11 72.4 50 78.0
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.3e-11 72.4 50 78.0
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.3e-11 72.4 50 78.0
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 2.3e-11 72.4 53 71.7
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 2.3e-11 72.4 63 61.9
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 2.3e-11 72.4 63 61.9
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 3.0e-11 72.0 50 76.0
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 3.9e-11 71.6 50 74.0
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 3.9e-11 71.6 50 74.0
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 3.9e-11 71.6 50 74.0
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 3.9e-11 71.6 50 74.0
SEGI_00225 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 3.9e-11 71.6 50 76.0
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 6.6e-11 70.9 63 60.3
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 6.6e-11 70.9 63 60.3
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 6.6e-11 70.9 50 74.0
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 8.6e-11 70.5 50 74.0
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 1.1e-10 70.1 63 57.1
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 1.5e-10 69.7 49 71.4
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.5e-10 69.7 50 74.0
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 3.3e-10 68.6 50 70.0
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 3.3e-10 68.6 50 70.0
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 4.3e-10 68.2 63 58.7
GSVIVG01023355001 Vitis vinifera HOM05D002001 ORTHO05D004100 4.3e-10 68.2 50 74.0


User provided reference genes

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