Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00991 Brassica carinata HOM05D002810 ORTHO05D024459 2.7e-49 198.4 99 100.0
C03p86650 Brassica napus HOM05D002810 ORTHO05D024459 2.7e-49 198.4 99 100.0
BolC3t20961H Brassica oleracea HOM05D002810 ORTHO05D024459 2.7e-17 92.0 50 94.0
BcaB03g13853 Brassica carinata HOM05D002810 ORTHO05D003983 9.5e-15 83.6 131 46.6
BcaC06g35470 Brassica carinata HOM05D002810 ORTHO05D003983 9.5e-15 83.6 131 46.6
A07p10180 Brassica napus HOM05D002810 ORTHO05D003983 9.5e-15 83.6 131 46.6
C07p15700 Brassica napus HOM05D002810 ORTHO05D003983 9.5e-15 83.6 131 46.6
BolC7t42060H Brassica oleracea HOM05D002810 ORTHO05D003983 9.5e-15 83.6 131 46.6
BraA07t28811Z Brassica rapa HOM05D002810 ORTHO05D003983 9.5e-15 83.6 131 46.6
Sp1g25770 Schrenkiella parvula HOM05D002810 ORTHO05D003983 9.5e-15 83.6 131 46.6
CARHR029560 Cardamine hirsuta HOM05D002810 ORTHO05D003983 1.2e-14 83.2 131 46.6
Thhalv10006931m.g Eutrema salsugineum HOM05D002810 ORTHO05D003983 1.6e-14 82.8 131 46.6
BcaC05g26999 Brassica carinata HOM05D002810 ORTHO05D003983 1.4e-13 79.7 131 45.0
C05p28620 Brassica napus HOM05D002810 ORTHO05D003983 1.4e-13 79.7 131 45.0
BolC5t31584H Brassica oleracea HOM05D002810 ORTHO05D003983 1.4e-13 79.7 131 45.0
ClCG01G020940 Citrullus lanatus HOM05D002810 ORTHO05D003983 3.1e-13 78.6 129 44.2
BcaB07g32572 Brassica carinata HOM05D002810 ORTHO05D003983 4.0e-13 78.2 131 44.3
Aa31LG1G22590 Aethionema arabicum HOM05D002810 ORTHO05D003983 6.8e-13 77.4 131 42.7
AL1G43730 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 6.8e-13 77.4 129 45.0
Carub.0001s2811 Capsella rubella HOM05D002810 ORTHO05D003983 6.8e-13 77.4 129 45.0
A09p36620 Brassica napus HOM05D002810 ORTHO05D003983 1.2e-12 76.6 131 44.3
BraA09t39182Z Brassica rapa HOM05D002810 ORTHO05D003983 1.2e-12 76.6 131 44.3
AT1G29880 Arabidopsis thaliana HOM05D002810 ORTHO05D003983 2.0e-12 75.9 129 45.0
CsaV3_2G009270 Cucumis sativus L. HOM05D002810 ORTHO05D003983 2.6e-12 75.5 120 43.3
Lj9A487T49 Lonicera japonica HOM05D002810 ORTHO05D003983 5.8e-12 74.3 120 42.5
Carub.0003s2844 Capsella rubella HOM05D002810 ORTHO05D003983 7.5e-12 73.9 131 43.5
CiPaw.05G101000 Carya illinoinensis HOM05D002810 ORTHO05D003983 7.5e-12 73.9 122 41.0
AUR62043309 Chenopodium quinoa HOM05D002810 ORTHO05D003983 9.9e-12 73.6 120 42.5
TAR371G0759 Trochodendron aralioides HOM05D002810 ORTHO05D003983 9.9e-12 73.6 120 42.5
GSVIVG01001092001 Vitis vinifera HOM05D002810 ORTHO05D003983 9.9e-12 73.6 131 41.2
Ah.11g046940 Amaranthus hybridus HOM05D002810 ORTHO05D003983 1.3e-11 73.2 120 41.7
QL08p055697 Quercus lobata HOM05D002810 ORTHO05D003983 1.3e-11 73.2 120 41.7
Sed0005865 Sechium edule HOM05D002810 ORTHO05D003983 1.3e-11 73.2 120 42.5
AUR62032217 Chenopodium quinoa HOM05D002810 ORTHO05D003983 1.7e-11 72.8 120 42.5
ClCG11G011160 Citrullus lanatus HOM05D002810 ORTHO05D003983 1.7e-11 72.8 120 42.5
Gohir.A04G101600 Gossypium hirsutum HOM05D002810 ORTHO05D003983 1.7e-11 72.8 120 42.5
Hma1.2p1_0787F.1_g217990 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 1.7e-11 72.8 120 40.8
ECA233G3858 Erigeron canadensis HOM05D002810 ORTHO05D003983 2.2e-11 72.4 120 42.5
Dinv23230 Davidia involucrata HOM05D002810 ORTHO05D003983 2.9e-11 72.0 120 41.7
Lalb_Chr04g0257351 Lupinus albus HOM05D002810 ORTHO05D003983 2.9e-11 72.0 131 40.5
Peaxi162Scf00842g00331 Petunia axillaris HOM05D002810 ORTHO05D003983 2.9e-11 72.0 122 41.0
Sed0007290 Sechium edule HOM05D002810 ORTHO05D003983 2.9e-11 72.0 120 42.5
TWI18G0448 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 2.9e-11 72.0 131 41.2
Aqoxy1G00627 Aquilegia oxysepala HOM05D002810 ORTHO05D003983 4.9e-11 71.2 75 57.3
MELO3C003905.2 Cucumis melo HOM05D002810 ORTHO05D003983 4.9e-11 71.2 120 41.7
Gohir.D04G140800 Gossypium hirsutum HOM05D002810 ORTHO05D003983 4.9e-11 71.2 120 41.7
Gorai.012G125800 Gossypium raimondii HOM05D002810 ORTHO05D003983 4.9e-11 71.2 120 41.7
SGA_v2.0_scaffold168G38551 Striga asiatica HOM05D002810 ORTHO05D003983 4.9e-11 71.2 120 42.5
EL10Ac5g11280 Beta vulgaris HOM05D002810 ORTHO05D003983 6.4e-11 70.9 120 40.8
Potri.003G162300 Populus trichocarpa HOM05D002810 ORTHO05D003983 6.4e-11 70.9 122 39.3
Atru.chr12.1423 Acer truncatum HOM05D002810 ORTHO05D003983 8.3e-11 70.5 120 41.7
AL5G22970 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 8.3e-11 70.5 121 42.1
CSS0026992 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 8.3e-11 70.5 120 40.8
CSS0035484 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 8.3e-11 70.5 120 40.8
CSS0036034 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 8.3e-11 70.5 120 40.8
Lalb_Chr17g0335731 Lupinus albus HOM05D002810 ORTHO05D003983 8.3e-11 70.5 122 40.2
Nn4g22128 Nelumbo nucifera HOM05D002810 ORTHO05D003983 8.3e-11 70.5 122 40.2
Nitab4.5_0000691g0260 Nicotiana tabacum HOM05D002810 ORTHO05D003983 8.3e-11 70.5 122 40.2
Nitab4.5_0007955g0020 Nicotiana tabacum HOM05D002810 ORTHO05D003983 8.3e-11 70.5 122 40.2
vmacro19189 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 8.3e-11 70.5 120 42.5
Potri.001G067800 Populus trichocarpa HOM05D002810 ORTHO05D003983 1.1e-10 70.1 129 39.5
PGR119G2030 Punica granatum HOM05D002810 ORTHO05D003983 1.1e-10 70.1 128 39.1
Sabra01G0047100 Salix brachista HOM05D002810 ORTHO05D003983 1.1e-10 70.1 129 39.5
COL.COLO4_24379 Corchorus olitorius HOM05D002810 ORTHO05D003983 1.4e-10 69.7 120 41.7
Duzib248G0947 Durio zibethinus HOM05D002810 ORTHO05D003983 1.4e-10 69.7 122 40.2
Rhsim08G0198100 Rhododendron simsii HOM05D002810 ORTHO05D003983 1.4e-10 69.7 118 41.5
vmacro16759 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 1.4e-10 69.7 74 55.4
GSVIVG01008654001 Vitis vinifera HOM05D002810 ORTHO05D003983 1.4e-10 69.7 120 40.8
Thecc.02G191900 Theobroma cacao HOM05D002810 ORTHO05D003983 1.9e-10 69.3 122 41.0
CAN.G849.7 Capsicum annuum HOM05D002810 ORTHO05D003983 2.4e-10 68.9 122 39.3
Dinv05540 Davidia involucrata HOM05D002810 ORTHO05D003983 2.4e-10 68.9 120 38.3
Hund02512 Selenicereus undatus HOM05D002810 ORTHO05D003983 2.4e-10 68.9 120 40.0
Hund10032 Selenicereus undatus HOM05D002810 ORTHO05D003983 2.4e-10 68.9 120 40.0
Cc11_g14990 Coffea canephora HOM05D002810 ORTHO05D003983 3.2e-10 68.6 129 38.8
MD13G1131000 Malus domestica HOM05D002810 ORTHO05D003983 3.2e-10 68.6 120 40.8
Manes.08G101000 Manihot esculenta HOM05D002810 ORTHO05D003983 3.2e-10 68.6 122 39.3
Manes.09G188200 Manihot esculenta HOM05D002810 ORTHO05D003983 4.1e-10 68.2 120 40.0
Nn3g16268 Nelumbo nucifera HOM05D002810 ORTHO05D003983 4.1e-10 68.2 131 39.7
Solyc11g039830.2 Solanum lycopersicum HOM05D002810 ORTHO05D003983 4.1e-10 68.2 122 40.2
Sopen11g011720 Solanum pennellii HOM05D002810 ORTHO05D003983 4.1e-10 68.2 122 40.2
Hma1.2p1_0452F.1_g155970 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 5.4e-10 67.8 120 40.8
PGSC0003DMG400015909 Solanum tuberosum HOM05D002810 ORTHO05D003983 5.4e-10 67.8 122 40.2
SGA_v2.0_scaffold37G14676 Striga asiatica HOM05D002810 ORTHO05D003983 5.4e-10 67.8 120 39.2
unitig_736.g22830 Utricularia gibba HOM05D002810 ORTHO05D003983 5.4e-10 67.8 120 40.8
Cfa018257 Carpinus fangiana HOM05D002810 ORTHO05D003983 7.1e-10 67.4 122 39.3
COL.COLO4_19490 Corchorus olitorius HOM05D002810 ORTHO05D003983 7.1e-10 67.4 120 40.8
Sabra03G0118000 Salix brachista HOM05D002810 ORTHO05D003983 7.1e-10 67.4 120 39.2
COL.COLO4_37263 Corchorus olitorius HOM05D002810 ORTHO05D003983 9.2e-10 67.0 120 39.2
Phvul.008G004200 Phaseolus vulgaris HOM05D002810 ORTHO05D003983 9.2e-10 67.0 129 39.5
HPP92_000327 Vanilla planifolia HOM05D002810 ORTHO05D012408 9.2e-10 67.0 119 40.3
DCAR_013876 Daucus carota HOM05D002810 ORTHO05D003983 1.2e-09 66.6 120 40.0
Psat3g206520 Pisum sativum HOM05D002810 ORTHO05D003983 1.2e-09 66.6 131 38.9
Thecc.03G141100 Theobroma cacao HOM05D002810 ORTHO05D003983 1.2e-09 66.6 120 38.3
VMungo1383G1395 Vigna mungo HOM05D002810 ORTHO05D003983 1.2e-09 66.6 129 39.5
Ca_14018_v3 Cicer arietinum L. HOM05D002810 ORTHO05D003983 1.6e-09 66.2 131 38.9
DCAR_025646 Daucus carota HOM05D002810 ORTHO05D003983 1.6e-09 66.2 120 40.0
unitig_899.g14822 Utricularia gibba HOM05D002810 ORTHO05D003983 1.6e-09 66.2 120 40.0
CANSAT11G0290 Cannabis sativa HOM05D002810 ORTHO05D003983 2.1e-09 65.9 122 38.5
Glyma.08G363700 Glycine max HOM05D002810 ORTHO05D003983 2.7e-09 65.5 129 39.5
Oeu043187.1 Olea europaea HOM05D002810 ORTHO05D003983 2.7e-09 65.5 120 39.2
Prupe.1G214600 Prunus persica HOM05D002810 ORTHO05D003983 2.7e-09 65.5 134 39.6
MSTRG.9374 Avicennia marina HOM05D002810 ORTHO05D003983 3.5e-09 65.1 120 39.2
Duzib068G0223 Durio zibethinus HOM05D002810 ORTHO05D003983 3.5e-09 65.1 120 38.3
Lsat_1_v5_gn_8_125820 Lactuca sativa HOM05D002810 ORTHO05D003983 3.5e-09 65.1 120 38.3
SGA_v2.0_scaffold5G02803 Striga asiatica HOM05D002810 ORTHO05D003983 3.5e-09 65.1 120 38.3
Medtr3g006730 Medicago truncatula HOM05D002810 ORTHO05D003983 4.6e-09 64.7 131 38.2
Medtr3g006740 Medicago truncatula HOM05D002810 ORTHO05D003983 4.6e-09 64.7 122 37.7
Nitab4.5_0011600g0010 Nicotiana tabacum HOM05D002810 ORTHO05D003983 4.6e-09 64.7 120 39.2
Actinidia18296 Actinidia chinensis HOM05D002810 ORTHO05D003983 6.0e-09 64.3 120 38.3
Actinidia25515 Actinidia chinensis HOM05D002810 ORTHO05D003983 6.0e-09 64.3 120 38.3
AL7G10960 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 6.0e-09 64.3 131 39.7
Migut.I00670 Erythranthe guttata HOM05D002810 ORTHO05D003983 6.0e-09 64.3 119 40.3
Eucgr.G01975 Eucalyptus grandis HOM05D002810 ORTHO05D003983 6.0e-09 64.3 121 38.8
TAR374G0792 Trochodendron aralioides HOM05D002810 ORTHO05D003983 6.0e-09 64.3 74 52.7
ATR0807G207 Amborella trichopoda HOM05D002810 ORTHO05D003983 7.8e-09 63.9 120 37.5
CDE08G1318 Ceratophyllum demersum HOM05D002810 ORTHO05D003983 7.8e-09 63.9 129 38.8
HPP92_000360 Vanilla planifolia HOM05D002810 ORTHO05D050209 7.8e-09 63.9 102 42.2
CAN.G843.8 Capsicum annuum HOM05D002810 ORTHO05D003983 1.0e-08 63.5 120 39.2
MD16G1141200 Malus domestica HOM05D002810 ORTHO05D003983 1.0e-08 63.5 120 39.2
Haze_12505 Corylus avellana HOM05D002810 ORTHO05D003983 1.3e-08 63.2 122 37.7
Haze_21183 Corylus avellana HOM05D002810 ORTHO05D003983 1.3e-08 63.2 122 37.7
Oeu054157.1 Olea europaea HOM05D002810 ORTHO05D003983 1.3e-08 63.2 120 38.3
Os08g0538000 Oryza sativa ssp. japonica HOM05D002810 ORTHO05D003983 1.3e-08 63.2 120 38.3
TPR.G9721 Trifolium pratense HOM05D002810 ORTHO05D003983 1.3e-08 63.2 131 38.2
Cpa.g.sc13.180 Carica papaya HOM05D002810 ORTHO05D012408 1.7e-08 62.8 74 50.0
Cfa009452 Carpinus fangiana HOM05D002810 ORTHO05D003983 1.7e-08 62.8 122 37.7
RcHm_v2.0_Chr4g0428851 Rosa chinensis HOM05D002810 ORTHO05D003983 1.7e-08 62.8 75 50.7
Sc22g0003310 Simmondsia chinensis HOM05D002810 ORTHO05D003983 1.7e-08 62.8 120 39.2
ECA233G1476 Erigeron canadensis HOM05D002810 ORTHO05D003983 2.3e-08 62.4 119 40.3
FAN07G1588 Fragaria x ananassa HOM05D002810 ORTHO05D003983 2.3e-08 62.4 78 51.3
Nitab4.5_0000976g0080 Nicotiana tabacum HOM05D002810 ORTHO05D003983 2.3e-08 62.4 120 38.3
Sopen03g037090 Solanum pennellii HOM05D002810 ORTHO05D003983 2.3e-08 62.4 120 39.2
Zm00001eb037050 Zea mays HOM05D002810 ORTHO05D003983 2.3e-08 62.4 122 37.7
ATR0706G267 Amborella trichopoda HOM05D002810 ORTHO05D003983 3.0e-08 62.0 120 36.7
Eucgr.H04980 Eucalyptus grandis HOM05D002810 ORTHO05D003983 3.0e-08 62.0 75 49.3
Solyc03g118170.3 Solanum lycopersicum HOM05D002810 ORTHO05D003983 3.0e-08 62.0 120 39.2
Zm00001eb198180 Zea mays HOM05D002810 ORTHO05D003983 3.0e-08 62.0 120 38.3
arahy.Tifrunner.gnm1.ann1.Y7TDZM Arachis hypogaea HOM05D002810 ORTHO05D003983 3.9e-08 61.6 122 36.9
Lsat_1_v5_gn_8_125780 Lactuca sativa HOM05D002810 ORTHO05D003983 3.9e-08 61.6 102 39.2
Cc04_g05830 Coffea canephora HOM05D002810 ORTHO05D003983 5.1e-08 61.2 120 38.3
FvH4_4g22610 Fragaria vesca HOM05D002810 ORTHO05D003983 5.1e-08 61.2 75 48.0
FAN12G2350 Fragaria x ananassa HOM05D002810 ORTHO05D003983 5.1e-08 61.2 75 48.0
Peaxi162Scf00314g00629 Petunia axillaris HOM05D002810 ORTHO05D003983 5.1e-08 61.2 120 36.7
RcHm_v2.0_Chr1g0361881 Rosa chinensis HOM05D002810 ORTHO05D003983 5.1e-08 61.2 100 42.0
TWI75G1068 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 5.1e-08 61.2 122 37.7
FAN17G0004 Fragaria x ananassa HOM05D002810 ORTHO05D003983 6.6e-08 60.8 75 46.7
MD13G1145800 Malus domestica HOM05D002810 ORTHO05D003983 6.6e-08 60.8 75 49.3
Os04g0398300 Oryza sativa ssp. japonica HOM05D002810 ORTHO05D012408 6.6e-08 60.8 119 37.0
AUR62044211 Chenopodium quinoa HOM05D002810 ORTHO05D003983 8.6e-08 60.5 71 52.1
PGSC0003DMG400014239 Solanum tuberosum HOM05D002810 ORTHO05D003983 8.6e-08 60.5 120 38.3
THA.LOC104807285 Tarenaya hassleriana HOM05D002810 ORTHO05D003983 1.1e-07 60.1 129 36.4
Rhsim12G0181000 Rhododendron simsii HOM05D002810 ORTHO05D003983 1.9e-07 59.3 118 37.3
SHI04113 Sapria himalayana HOM05D002810 ORTHO05D003983 1.9e-07 59.3 122 36.1
Zm00001eb084770 Zea mays HOM05D002810 ORTHO05D003983 1.9e-07 59.3 74 50.0
Actinidia36844 Actinidia chinensis HOM05D002810 ORTHO05D003983 3.3e-07 58.5 120 35.8
Carub.0005s1043 Capsella rubella HOM05D002810 ORTHO05D024459 4.3e-07 58.2 57 61.4
FvH4_4g22450 Fragaria vesca HOM05D002810 ORTHO05D012408 4.3e-07 58.2 75 48.0
RcHm_v2.0_Chr4g0428711 Rosa chinensis HOM05D002810 ORTHO05D003983 5.6e-07 57.8 57 56.1
SalBow1G2675 Salvia bowleyana HOM05D002810 ORTHO05D003983 5.6e-07 57.8 120 38.3
Oeu043188.1 Olea europaea HOM05D002810 ORTHO05D012408 7.3e-07 57.4 67 52.2
Lj1g0018511 Lotus japonicus HOM05D002810 ORTHO05D003983 9.5e-07 57.0 122 36.1
MBI10_g44968_MAGBIO Magnolia biondii HOM05D002810 ORTHO05D003983 9.5e-07 57.0 76 48.7
PSO832G1639 Papaver somniferum HOM05D002810 ORTHO05D003983 9.5e-07 57.0 122 34.4
Ah.02g114570 Amaranthus hybridus HOM05D002810 ORTHO05D003983 1.2e-06 56.6 120 33.3
Migut.D01180 Erythranthe guttata HOM05D002810 ORTHO05D003983 2.8e-06 55.5 120 37.5
PSO591G0171 Papaver somniferum HOM05D002810 ORTHO05D003983 2.8e-06 55.5 122 35.2
SEGI_39194 Sequoiadendron giganteum HOM05D002810 ORTHO05D003983 2.8e-06 55.5 119 34.5
Carub.0015s0002 Capsella rubella HOM05D002810 ORTHO05D024459 4.7e-06 54.7 57 57.9
Eucgr.G02153 Eucalyptus grandis HOM05D002810 ORTHO05D003983 4.7e-06 54.7 75 48.0


User provided reference genes

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