Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 2.7e-183 645.2 328 100.0
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 5.1e-182 641.0 328 99.4
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 3.4e-178 628.2 328 95.4
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 7.7e-178 627.1 329 98.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 3.8e-177 624.8 328 97.9
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-176 623.2 328 94.8
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 3.7e-164 581.6 326 89.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 2.6e-162 575.5 328 88.7
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 7.7e-162 573.9 328 88.7
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-161 573.2 326 89.0
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.7e-161 572.8 341 88.0
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 8.0e-159 563.9 323 87.9
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 2.6e-157 558.9 323 87.6
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 7.5e-157 557.4 330 88.2
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-156 555.8 333 87.1
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 8.3e-148 527.3 372 74.7
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.8e-147 526.2 380 73.2
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 9.1e-147 523.9 293 88.7
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 3.5e-146 521.9 297 87.9
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 7.2e-144 514.2 331 80.1
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 4.1e-139 498.4 304 84.9
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.5e-136 490.0 333 76.3
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.3e-134 482.6 367 70.8
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 4.9e-132 474.9 331 72.5
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.4e-132 474.6 331 72.2
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 6.4e-132 474.6 331 72.2
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 2.4e-131 472.6 331 72.8
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 4.6e-130 468.4 333 71.2
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.3e-129 466.8 333 71.2
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 2.3e-129 466.1 331 70.4
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.3e-129 466.1 332 70.5
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 5.0e-129 464.9 332 69.3
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 5.0e-129 464.9 332 69.3
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 8.6e-129 464.2 334 71.3
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 3.3e-128 462.2 328 72.0
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 4.3e-128 461.8 331 70.7
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 5.6e-128 461.5 331 69.8
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 9.5e-128 460.7 334 70.4
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 2.1e-127 459.5 322 71.1
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.8e-127 459.1 331 71.3
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 3.6e-127 458.8 331 71.0
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 4.7e-127 458.4 323 70.6
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.4e-126 456.8 324 70.1
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.8e-126 456.4 331 70.7
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 2.3e-126 456.1 323 70.3
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 3.1e-126 455.7 330 68.8
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 4.0e-126 455.3 324 71.0
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 5.2e-126 454.9 331 70.4
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 6.8e-126 454.5 331 70.4
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.2e-125 453.8 332 69.0
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.2e-125 453.8 331 69.5
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.5e-125 453.4 325 69.8
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 2.0e-125 453.0 323 70.0
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.0e-125 453.0 335 69.3
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.6e-125 452.6 330 69.7
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.6e-125 452.6 333 71.2
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 3.4e-125 452.2 322 71.4
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 3.4e-125 452.2 331 68.6
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 3.4e-125 452.2 325 69.2
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 5.8e-125 451.4 330 69.4
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 5.8e-125 451.4 331 69.2
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.8e-125 450.7 332 68.4
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.8e-125 450.7 332 68.4
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 9.8e-125 450.7 323 70.0
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.3e-124 450.3 323 68.7
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.3e-124 450.3 331 69.2
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 1.7e-124 449.9 332 69.0
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.7e-124 449.9 326 69.6
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.2e-124 449.5 330 69.4
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.2e-124 449.5 323 70.0
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.9e-124 449.1 327 68.8
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 6.4e-124 448.0 331 69.5
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 6.4e-124 448.0 323 69.3
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 6.4e-124 448.0 332 69.9
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.4e-123 446.0 333 68.5
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 9.2e-123 444.1 334 68.9
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 2.0e-122 443.0 331 70.4
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 4.6e-122 441.8 329 68.7
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.1e-120 437.2 322 67.4
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.3e-120 435.6 331 66.8
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 4.3e-120 435.3 328 67.1
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.3e-120 435.3 342 66.7
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 5.6e-120 434.9 332 68.1
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 7.3e-120 434.5 329 69.6
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 7.3e-120 434.5 328 66.5
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.2e-119 433.7 331 66.2
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.2e-119 433.7 324 66.7
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.6e-119 433.3 333 67.3
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 8.9e-118 427.6 312 67.3
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.0e-117 426.4 263 79.1
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.2e-116 422.9 331 66.8
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.2e-114 417.2 324 63.9
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.2e-114 417.2 372 61.0
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 2.7e-114 416.0 264 77.3
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 3.5e-114 415.6 300 71.3
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.0e-113 414.1 391 59.3
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 8.6e-113 411.0 324 65.4
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.4e-110 403.7 332 62.3
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 4.0e-110 402.1 314 66.6
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-109 400.6 314 66.9
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 4.4e-109 398.7 329 62.6
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 5.8e-109 398.3 313 66.8
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.2e-108 396.4 330 60.9
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.4e-107 393.7 295 68.8
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.4e-107 393.7 329 60.5
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.9e-107 393.3 329 60.2
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 3.2e-107 392.5 322 61.8
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 5.4e-107 391.7 325 63.1
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.1e-106 389.8 260 75.0
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.7e-106 389.4 331 63.4
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.7e-106 389.4 307 62.5
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 4.6e-106 388.7 332 61.4
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 5.1e-105 385.2 346 61.6
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 8.6e-105 384.4 264 70.5
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.9e-104 383.3 239 77.8
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.2e-103 380.6 322 58.7
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.1e-103 379.8 229 80.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 8.1e-103 377.9 314 61.1
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 2.0e-101 373.2 331 58.6
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 6.4e-100 368.2 295 60.7
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 2.7e-98 362.8 355 57.5
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 6.0e-98 361.7 239 76.2
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.7e-97 360.1 349 57.0
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 2.3e-97 359.8 234 74.8
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 3.6e-95 352.4 258 71.3
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.1e-94 349.4 343 56.0
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 3.4e-93 345.9 319 65.2
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 8.4e-92 341.3 254 69.7
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.9e-91 340.1 329 63.5
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-91 339.3 256 69.5
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 4.2e-91 339.0 261 67.8
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 5.4e-91 338.6 272 59.9
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 7.1e-91 338.2 307 55.0
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.7e-90 336.3 250 70.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.6e-90 335.5 261 67.8
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.0e-89 334.3 205 79.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 1.7e-89 333.6 250 68.8
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.3e-89 333.2 265 61.9
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-89 332.8 259 68.0
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 3.9e-89 332.4 254 68.5
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 3.9e-89 332.4 254 68.5
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 3.9e-89 332.4 254 68.5
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 5.1e-89 332.0 265 67.2
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-88 330.5 247 69.6
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.8e-86 323.6 262 58.8
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 2.4e-86 323.2 277 62.8
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.8e-84 315.8 266 57.5
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 6.7e-81 305.1 234 62.8
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 4.5e-77 292.4 328 52.4
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.2e-74 284.3 332 51.2
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.1e-73 278.9 265 57.7
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 6.3e-71 271.9 219 68.5
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 4.5e-69 265.8 177 75.1
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.1e-67 261.2 253 57.3
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.0e-65 254.6 201 62.2
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.1e-62 242.7 194 66.5
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.8e-60 236.1 320 44.4
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.9e-59 233.8 228 58.3
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-58 231.1 260 51.2
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.4e-57 227.6 153 69.3
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-57 227.3 251 51.4
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 5.7e-56 222.2 153 68.6
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.8e-54 217.2 155 69.0
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.2e-53 214.5 177 58.8
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 6.5e-52 208.8 246 47.6
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 2.7e-50 203.4 173 59.5
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.3e-47 194.5 250 48.8
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.2e-47 193.7 173 55.5
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 8.2e-47 191.8 243 42.4
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 5.9e-45 185.7 202 48.5
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 2.9e-44 183.3 264 40.2
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.4e-43 178.3 134 65.7
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 8.8e-41 171.8 228 40.4
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 2.4e-38 163.7 109 71.6
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.8e-33 147.5 124 60.5
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.2e-32 144.8 112 67.9
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 4.8e-31 139.4 123 61.0
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.3e-31 138.7 83 79.5
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.6e-29 134.4 149 49.0
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.7e-28 131.0 77 72.7
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 4.2e-27 126.3 89 67.4
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 6.6e-20 102.4 54 96.3
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 1.2e-16 91.7 64 73.4
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.0e-12 78.6 93 44.1
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.0e-12 77.0 51 76.5
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.0e-12 77.0 51 76.5
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 6.6e-12 75.9 51 74.5
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-11 74.3 51 72.5
Psat1g000040 Pisum sativum HOM05D003576 ORTHO05D004124 5.2e-09 66.2 86 41.9


User provided reference genes

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